Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02605 and BWI76_RS02610 overlap by 4 nucleotides BWI76_RS02610 and BWI76_RS02615 are separated by 106 nucleotides BWI76_RS02615 and BWI76_RS02620 are separated by 364 nucleotides
BWI76_RS02605: BWI76_RS02605 - esterase, at 533,053 to 533,769
_RS02605
BWI76_RS02610: BWI76_RS02610 - transcriptional regulator, at 533,766 to 534,521
_RS02610
BWI76_RS02615: BWI76_RS02615 - L-ascorbate-6-phosphate lactonase, at 534,628 to 535,692
_RS02615
BWI76_RS02620: BWI76_RS02620 - PTS ascorbate transporter subunit IIC, at 536,057 to 537,457
_RS02620
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 533.794 kb on + strand at 533.866 kb on + strand, within BWI76_RS02610 at 533.902 kb on + strand, within BWI76_RS02610 at 533.974 kb on + strand, within BWI76_RS02610 at 533.982 kb on - strand, within BWI76_RS02610 at 534.002 kb on - strand, within BWI76_RS02610 at 534.053 kb on + strand, within BWI76_RS02610 at 534.073 kb on - strand, within BWI76_RS02610 at 534.082 kb on + strand, within BWI76_RS02610 at 534.165 kb on + strand, within BWI76_RS02610 at 534.633 kb on - strand at 534.646 kb on - strand at 534.646 kb on - strand at 534.652 kb on + strand at 534.659 kb on - strand at 534.905 kb on - strand, within BWI76_RS02615 at 535.039 kb on - strand, within BWI76_RS02615 at 535.131 kb on - strand, within BWI76_RS02615 at 535.134 kb on - strand, within BWI76_RS02615 at 535.134 kb on - strand, within BWI76_RS02615 at 535.156 kb on - strand, within BWI76_RS02615 at 535.240 kb on + strand, within BWI76_RS02615 at 535.241 kb on - strand, within BWI76_RS02615 at 535.291 kb on + strand, within BWI76_RS02615 at 535.299 kb on - strand at 535.415 kb on + strand, within BWI76_RS02615 at 535.527 kb on - strand, within BWI76_RS02615 at 535.602 kb on - strand at 535.799 kb on + strand at 536.082 kb on - strand at 536.098 kb on + strand at 536.106 kb on - strand at 536.145 kb on + strand at 536.153 kb on - strand at 536.216 kb on - strand, within BWI76_RS02620 at 536.216 kb on - strand, within BWI76_RS02620 at 536.245 kb on - strand, within BWI76_RS02620 at 536.275 kb on + strand, within BWI76_RS02620 at 536.283 kb on - strand, within BWI76_RS02620 at 536.344 kb on + strand, within BWI76_RS02620 at 536.354 kb on + strand, within BWI76_RS02620 at 536.368 kb on + strand at 536.370 kb on + strand, within BWI76_RS02620 at 536.376 kb on - strand, within BWI76_RS02620 at 536.389 kb on - strand, within BWI76_RS02620 at 536.406 kb on - strand, within BWI76_RS02620 at 536.533 kb on + strand, within BWI76_RS02620 at 536.568 kb on - strand, within BWI76_RS02620
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 533,794 + +0.4 533,866 + BWI76_RS02610 0.13 +0.5 533,902 + BWI76_RS02610 0.18 -1.7 533,974 + BWI76_RS02610 0.28 +0.7 533,982 - BWI76_RS02610 0.29 -0.1 534,002 - BWI76_RS02610 0.31 +0.5 534,053 + BWI76_RS02610 0.38 +0.9 534,073 - BWI76_RS02610 0.41 -0.5 534,082 + BWI76_RS02610 0.42 -1.1 534,165 + BWI76_RS02610 0.53 -0.8 534,633 - +0.2 534,646 - +1.5 534,646 - +0.1 534,652 + -1.0 534,659 - -1.3 534,905 - BWI76_RS02615 0.26 -0.5 535,039 - BWI76_RS02615 0.39 -0.5 535,131 - BWI76_RS02615 0.47 -0.6 535,134 - BWI76_RS02615 0.48 +1.6 535,134 - BWI76_RS02615 0.48 -0.8 535,156 - BWI76_RS02615 0.50 -0.6 535,240 + BWI76_RS02615 0.57 -0.0 535,241 - BWI76_RS02615 0.58 -1.0 535,291 + BWI76_RS02615 0.62 -1.0 535,299 - +0.6 535,415 + BWI76_RS02615 0.74 -0.4 535,527 - BWI76_RS02615 0.84 -0.1 535,602 - -1.8 535,799 + +0.7 536,082 - -0.8 536,098 + +0.1 536,106 - -0.1 536,145 + +1.2 536,153 - -0.8 536,216 - BWI76_RS02620 0.11 +1.5 536,216 - BWI76_RS02620 0.11 -0.1 536,245 - BWI76_RS02620 0.13 +1.2 536,275 + BWI76_RS02620 0.16 -1.3 536,283 - BWI76_RS02620 0.16 +2.2 536,344 + BWI76_RS02620 0.20 -0.1 536,354 + BWI76_RS02620 0.21 +0.4 536,368 + +0.6 536,370 + BWI76_RS02620 0.22 +0.7 536,376 - BWI76_RS02620 0.23 +3.1 536,389 - BWI76_RS02620 0.24 +3.2 536,406 - BWI76_RS02620 0.25 +0.2 536,533 + BWI76_RS02620 0.34 +1.7 536,568 - BWI76_RS02620 0.36 +4.2
Or see this region's nucleotide sequence