Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16365

Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5
1,422,065	+		BBR_RS16360	0.37	+0.9
1,422,095	-		BBR_RS16360	0.39	+1.4
1,422,097	+		BBR_RS16360	0.39	+0.4
1,422,111	-		BBR_RS16360	0.40	-0.1
1,422,126	+		BBR_RS16360	0.42	+1.8
1,422,149	-		BBR_RS16360	0.43	-1.5
1,422,149	-		BBR_RS16360	0.43	+0.9
1,422,156	+		BBR_RS16360	0.44	+3.9
1,422,156	+		BBR_RS16360	0.44	-0.6
1,422,156	+		BBR_RS16360	0.44	+0.9
1,422,234	-		BBR_RS16360	0.50	-0.6
1,422,234	-		BBR_RS16360	0.50	-0.5
1,422,234	-		BBR_RS16360	0.50	-0.5
1,422,256	-		BBR_RS16360	0.52	+1.3
1,422,267	+		BBR_RS16360	0.53	+0.4
1,422,301	+		BBR_RS16360	0.55	+0.4
1,422,317	-		BBR_RS16360	0.57	+1.8
1,422,366	-		BBR_RS16360	0.60	+1.4
1,422,433	+		BBR_RS16360	0.66	+0.6
1,422,442	-		BBR_RS16360	0.66	-1.1
1,422,442	-		BBR_RS16360	0.66	-0.6
1,422,442	-		BBR_RS16360	0.66	-1.8
1,422,477	-		BBR_RS16360	0.69	-2.4
1,422,497	-		BBR_RS16360	0.71	+0.3
1,422,522	+		BBR_RS16360	0.73	+0.3
1,422,530	-		BBR_RS16360	0.73	+0.5
1,422,552	-		BBR_RS16360	0.75	-1.2
1,422,560	+		BBR_RS16360	0.76	+2.6
1,422,672	-		BBR_RS16360	0.85	+1.0
1,422,776	+				+0.0
1,422,820	-				+1.8
1,422,821	+				+0.2
1,423,007	+				-0.3
1,423,021	+				-0.2
1,423,081	-				-1.0
1,423,101	+				+1.0
1,423,101	+				+0.9
1,423,109	-				-0.4
1,423,172	+				-0.0
1,423,181	-				-0.3
1,423,215	-				-0.7
1,423,215	-				-2.2
1,423,235	-				+0.6
1,423,235	-				-0.8
1,423,301	-				+1.6
1,423,361	-				-0.7
1,423,361	-				-2.5
1,423,399	-		BBR_RS16365	0.11	-1.1
1,423,411	-		BBR_RS16365	0.11	-1.3
1,423,440	+		BBR_RS16365	0.12	+0.6
1,423,440	+		BBR_RS16365	0.12	+1.4
1,423,455	+		BBR_RS16365	0.13	+1.0
1,423,476	-		BBR_RS16365	0.13	+0.1
1,423,502	+		BBR_RS16365	0.14	+0.0
1,423,502	+		BBR_RS16365	0.14	-0.5
1,423,552	+		BBR_RS16365	0.16	+0.1
1,423,583	+		BBR_RS16365	0.17	+0.8
1,423,583	+		BBR_RS16365	0.17	-1.1
1,423,606	+		BBR_RS16365	0.17	+0.9
1,423,614	-		BBR_RS16365	0.18	+3.0
1,423,662	+		BBR_RS16365	0.19	-0.1
1,423,732	+		BBR_RS16365	0.22	+0.6
1,423,740	-		BBR_RS16365	0.22	-0.3
1,423,758	-		BBR_RS16365	0.22	+0.7
1,423,785	+		BBR_RS16365	0.23	-1.5
1,423,785	+		BBR_RS16365	0.23	-1.1
1,423,877	+		BBR_RS16365	0.26	-0.8
1,423,877	-		BBR_RS16365	0.26	+3.3
1,423,913	+		BBR_RS16365	0.27	-0.1
1,423,913	+		BBR_RS16365	0.27	+0.1
1,423,921	-		BBR_RS16365	0.28	+0.3
1,423,921	-		BBR_RS16365	0.28	+4.5
1,423,960	+		BBR_RS16365	0.29	+2.0
1,423,968	-		BBR_RS16365	0.29	-2.0
1,423,970	+		BBR_RS16365	0.29	-0.7
1,423,983	-		BBR_RS16365	0.30	+0.9
1,423,991	+		BBR_RS16365	0.30	+0.3
1,424,117	+		BBR_RS16365	0.34	-0.4
1,424,132	-		BBR_RS16365	0.34	+1.6
1,424,147	-		BBR_RS16365	0.35	-0.4
1,424,158	+		BBR_RS16365	0.35	+3.4
1,424,183	+		BBR_RS16365	0.36	-0.5
1,424,183	+		BBR_RS16365	0.36	+0.1
1,424,202	+		BBR_RS16365	0.37	-0.1
1,424,312	+		BBR_RS16365	0.40	+3.3
1,424,335	-		BBR_RS16365	0.41	+0.4
1,424,436	+		BBR_RS16365	0.44	-1.1
1,424,439	-		BBR_RS16365	0.44	-1.1
1,424,448	-		BBR_RS16365	0.45	+1.6
1,424,448	-		BBR_RS16365	0.45	-2.1
1,424,468	+		BBR_RS16365	0.45	-0.4
1,424,491	-		BBR_RS16365	0.46	-0.2
1,424,539	+		BBR_RS16365	0.48	-0.8
1,424,546	+		BBR_RS16365	0.48	+1.6
1,424,839	-		BBR_RS16365	0.57	+0.2
1,424,864	-		BBR_RS16365	0.58	-0.4
1,424,864	-		BBR_RS16365	0.58	+3.0
1,424,915	-		BBR_RS16365	0.60	+1.7
1,424,985	-		BBR_RS16365	0.62	-2.1
1,425,007	+		BBR_RS16365	0.63	+1.7
1,425,087	-		BBR_RS16365	0.65	+0.8
1,425,105	+		BBR_RS16365	0.66	-0.6
1,425,112	+		BBR_RS16365	0.66	-0.5
1,425,118	-		BBR_RS16365	0.66	+0.8
1,425,120	-		BBR_RS16365	0.66	-0.6
1,425,120	-		BBR_RS16365	0.66	+2.7
1,425,171	+		BBR_RS16365	0.68	+2.2
1,425,177	+		BBR_RS16365	0.68	-0.4
1,425,177	+		BBR_RS16365	0.68	+1.6
1,425,186	+		BBR_RS16365	0.68	-1.2
1,425,196	+		BBR_RS16365	0.69	+0.9
1,425,196	+		BBR_RS16365	0.69	+1.5
1,425,196	+		BBR_RS16365	0.69	+1.1
1,425,204	-		BBR_RS16365	0.69	-0.2
1,425,204	-		BBR_RS16365	0.69	+2.0
1,425,204	-		BBR_RS16365	0.69	+0.7
1,425,251	+		BBR_RS16365	0.70	+4.4
1,425,251	+		BBR_RS16365	0.70	-1.5
1,425,255	-		BBR_RS16365	0.71	-0.5
1,425,255	-		BBR_RS16365	0.71	-2.0
1,425,259	-		BBR_RS16365	0.71	-1.5
1,425,267	+		BBR_RS16365	0.71	+2.5
1,425,309	-		BBR_RS16365	0.72	-1.3
1,425,330	+		BBR_RS16365	0.73	-0.8
1,425,330	+		BBR_RS16365	0.73	+3.3
1,425,330	+		BBR_RS16365	0.73	-0.4
1,425,338	-		BBR_RS16365	0.73	+0.6
1,425,383	+		BBR_RS16365	0.75	+1.5
1,425,399	+		BBR_RS16365	0.75	-1.4
1,425,404	+		BBR_RS16365	0.75	-0.6
1,425,413	-		BBR_RS16365	0.76	+1.7
1,425,497	-		BBR_RS16365	0.78	+0.0
1,425,497	-		BBR_RS16365	0.78	+0.4
1,425,497	-		BBR_RS16365	0.78	-0.2
1,425,514	+		BBR_RS16365	0.79	+0.7
1,425,514	+		BBR_RS16365	0.79	+1.7
1,425,514	+		BBR_RS16365	0.79	+1.7
1,425,514	+		BBR_RS16365	0.79	+2.6
1,425,514	+		BBR_RS16365	0.79	+2.3
1,425,553	+		BBR_RS16365	0.80	+3.6
1,425,564	+		BBR_RS16365	0.81	-0.1
1,425,581	+		BBR_RS16365	0.81	-0.2
1,425,589	-		BBR_RS16365	0.81	-0.6
1,425,609	+		BBR_RS16365	0.82	-0.6
1,425,609	+		BBR_RS16365	0.82	+3.2
1,425,611	+		BBR_RS16365	0.82	-0.0
1,425,614	+		BBR_RS16365	0.82	+1.2
1,425,619	+		BBR_RS16365	0.82	+2.7
1,425,654	-		BBR_RS16365	0.83	-1.2
1,425,667	+		BBR_RS16365	0.84	-0.0
1,425,689	-		BBR_RS16365	0.85	+0.4
1,425,690	-		BBR_RS16365	0.85	+3.8
1,425,699	+		BBR_RS16365	0.85	+3.7
1,425,729	+		BBR_RS16365	0.86	+1.4
1,425,739	+		BBR_RS16365	0.86	+3.1
1,425,772	-		BBR_RS16365	0.87	-1.1
1,425,822	+		BBR_RS16365	0.89	-1.2
1,425,834	+		BBR_RS16365	0.89	-0.6
1,425,834	+		BBR_RS16365	0.89	+2.0
1,425,834	+		BBR_RS16365	0.89	-1.0
1,425,873	+				+0.7
1,425,900	+				+3.5
1,425,938	+				+0.3
1,425,946	-				+0.4
1,425,952	-				+0.1
1,425,976	-				-0.6
1,426,012	-				+2.6
1,426,030	-				+0.8
1,426,060	+				+3.2
1,426,071	+				+0.8
1,426,071	+				+0.2
1,426,071	+				-1.2
1,426,071	+				+0.3
1,426,079	-				+2.1
1,426,079	-				+2.6
1,426,079	-				+1.2
1,426,079	-				+0.8
1,426,079	-				+3.8
1,426,079	-				+1.4
1,426,089	-				-0.2
1,426,220	+				+0.4
1,426,266	+				+0.4
1,426,274	-				+0.9
1,426,287	+				+0.4
1,426,360	+				+0.7
1,426,368	-				-0.7
1,426,463	+				-1.5
1,426,487	+				+1.5
1,426,503	+				+0.1
1,426,522	-				+0.6
1,426,531	+				-1.1
1,426,539	-				-0.5
1,426,581	-				+2.5
1,426,622	-				+1.7
1,426,652	-				+1.4
1,426,656	+				+0.7
1,426,656	+				+0.3
1,426,664	-				-1.0
1,426,686	+				+1.4
1,426,686	+				+3.2
1,426,696	+				-1.2
1,426,696	+				-0.7
1,426,760	+		BBR_RS16370	0.10	+1.7
1,426,868	+		BBR_RS16370	0.14	-2.5
1,426,871	+		BBR_RS16370	0.14	+3.4
1,426,874	-		BBR_RS16370	0.14	-1.5
1,426,874	-		BBR_RS16370	0.14	-0.3
1,426,881	-		BBR_RS16370	0.14	-0.4
1,426,881	-		BBR_RS16370	0.14	+3.0
1,426,947	-		BBR_RS16370	0.16	-1.1
1,426,956	+		BBR_RS16370	0.16	-0.5
1,426,956	+		BBR_RS16370	0.16	-0.8
1,427,100	-		BBR_RS16370	0.21	-0.0