Experiment: diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11620 and BBR_RS11625 are separated by 637 nucleotides BBR_RS11625 and BBR_RS11630 are separated by 633 nucleotides
BBR_RS11620: BBR_RS11620 - Two-component sensor protein, at 362,776 to 363,942
_RS11620
BBR_RS11625: BBR_RS11625 - transposase, at 364,580 to 364,801
_RS11625
BBR_RS11630: BBR_RS11630 - MFS transporter, at 365,435 to 366,640
_RS11630
Position (kb) 364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 363.582 kb on + strand, within BBR_RS11620 at 363.582 kb on + strand, within BBR_RS11620 at 363.590 kb on - strand, within BBR_RS11620 at 363.590 kb on - strand, within BBR_RS11620 at 363.590 kb on - strand, within BBR_RS11620 at 363.590 kb on - strand, within BBR_RS11620 at 363.590 kb on - strand, within BBR_RS11620 at 363.590 kb on - strand, within BBR_RS11620 at 363.642 kb on - strand, within BBR_RS11620 at 363.657 kb on - strand, within BBR_RS11620 at 363.685 kb on - strand, within BBR_RS11620 at 363.687 kb on + strand, within BBR_RS11620 at 363.688 kb on + strand, within BBR_RS11620 at 363.688 kb on + strand, within BBR_RS11620 at 363.688 kb on + strand, within BBR_RS11620 at 363.688 kb on + strand, within BBR_RS11620 at 363.689 kb on + strand, within BBR_RS11620 at 363.751 kb on - strand, within BBR_RS11620 at 363.815 kb on - strand, within BBR_RS11620 at 363.826 kb on - strand at 363.860 kb on - strand at 363.991 kb on + strand at 363.999 kb on - strand at 364.009 kb on - strand at 364.064 kb on - strand at 364.088 kb on - strand at 364.091 kb on + strand at 364.094 kb on + strand at 364.099 kb on - strand at 364.102 kb on - strand at 364.102 kb on - strand at 364.108 kb on + strand at 364.121 kb on - strand at 364.166 kb on - strand at 364.171 kb on - strand at 364.188 kb on + strand at 364.188 kb on + strand at 364.188 kb on + strand at 364.188 kb on + strand at 364.191 kb on + strand at 364.204 kb on + strand at 364.226 kb on + strand at 364.236 kb on + strand at 364.248 kb on + strand at 364.254 kb on + strand at 364.254 kb on + strand at 364.259 kb on + strand at 364.259 kb on + strand at 364.264 kb on + strand at 364.267 kb on - strand at 364.272 kb on - strand at 364.273 kb on + strand at 364.309 kb on + strand at 364.312 kb on - strand at 364.317 kb on - strand at 364.325 kb on + strand at 364.348 kb on - strand at 364.350 kb on + strand at 364.358 kb on - strand at 364.414 kb on - strand at 364.414 kb on - strand at 364.430 kb on + strand at 364.437 kb on + strand at 364.466 kb on + strand at 364.483 kb on - strand at 364.485 kb on - strand at 364.499 kb on - strand at 364.539 kb on + strand at 364.548 kb on + strand at 364.548 kb on + strand at 364.548 kb on + strand at 364.564 kb on - strand at 364.565 kb on - strand at 364.599 kb on + strand at 364.609 kb on + strand, within BBR_RS11625 at 364.609 kb on + strand, within BBR_RS11625 at 364.614 kb on + strand, within BBR_RS11625 at 364.614 kb on + strand, within BBR_RS11625 at 364.614 kb on + strand, within BBR_RS11625 at 364.639 kb on + strand, within BBR_RS11625 at 364.640 kb on + strand, within BBR_RS11625 at 364.640 kb on + strand, within BBR_RS11625 at 364.640 kb on + strand, within BBR_RS11625 at 364.643 kb on - strand, within BBR_RS11625 at 364.643 kb on - strand, within BBR_RS11625 at 364.648 kb on - strand, within BBR_RS11625 at 364.688 kb on - strand, within BBR_RS11625 at 364.694 kb on - strand, within BBR_RS11625 at 364.710 kb on + strand, within BBR_RS11625 at 364.710 kb on + strand, within BBR_RS11625 at 364.719 kb on + strand, within BBR_RS11625 at 364.769 kb on + strand, within BBR_RS11625 at 364.770 kb on + strand, within BBR_RS11625 at 364.777 kb on - strand, within BBR_RS11625 at 364.777 kb on - strand, within BBR_RS11625 at 364.778 kb on - strand, within BBR_RS11625 at 364.778 kb on - strand, within BBR_RS11625 at 364.859 kb on + strand at 364.859 kb on + strand at 364.905 kb on + strand at 364.906 kb on + strand at 364.909 kb on + strand at 364.909 kb on + strand at 364.913 kb on - strand at 364.913 kb on - strand at 364.925 kb on + strand at 364.925 kb on + strand at 364.959 kb on + strand at 364.981 kb on - strand at 365.007 kb on + strand at 365.064 kb on + strand at 365.064 kb on + strand at 365.065 kb on + strand at 365.072 kb on - strand at 365.072 kb on - strand at 365.089 kb on + strand at 365.089 kb on + strand at 365.091 kb on + strand at 365.091 kb on + strand at 365.091 kb on + strand at 365.141 kb on + strand at 365.141 kb on + strand at 365.141 kb on + strand at 365.141 kb on + strand at 365.141 kb on - strand at 365.144 kb on - strand at 365.149 kb on - strand at 365.149 kb on - strand at 365.149 kb on - strand at 365.159 kb on + strand at 365.159 kb on + strand at 365.159 kb on + strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.172 kb on - strand at 365.179 kb on + strand at 365.181 kb on + strand at 365.185 kb on - strand at 365.187 kb on - strand at 365.187 kb on - strand at 365.190 kb on + strand at 365.197 kb on + strand at 365.198 kb on - strand at 365.214 kb on + strand at 365.214 kb on + strand at 365.236 kb on + strand at 365.236 kb on + strand at 365.247 kb on + strand at 365.247 kb on + strand at 365.252 kb on + strand at 365.255 kb on - strand at 365.260 kb on - strand at 365.260 kb on - strand at 365.287 kb on + strand at 365.298 kb on - strand at 365.299 kb on - strand at 365.402 kb on - strand at 365.402 kb on - strand at 365.405 kb on + strand at 365.415 kb on + strand at 365.425 kb on + strand at 365.425 kb on + strand at 365.433 kb on - strand at 365.443 kb on + strand at 365.443 kb on + strand at 365.443 kb on + strand at 365.443 kb on + strand at 365.448 kb on + strand at 365.459 kb on - strand at 365.510 kb on - strand at 365.510 kb on - strand at 365.516 kb on + strand at 365.556 kb on - strand, within BBR_RS11630 at 365.560 kb on - strand, within BBR_RS11630 at 365.613 kb on + strand, within BBR_RS11630 at 365.618 kb on + strand, within BBR_RS11630 at 365.646 kb on + strand, within BBR_RS11630 at 365.690 kb on + strand, within BBR_RS11630 at 365.690 kb on + strand, within BBR_RS11630 at 365.690 kb on + strand, within BBR_RS11630 at 365.698 kb on - strand, within BBR_RS11630 at 365.698 kb on - strand, within BBR_RS11630 at 365.699 kb on + strand, within BBR_RS11630 at 365.708 kb on + strand, within BBR_RS11630 at 365.708 kb on + strand, within BBR_RS11630 at 365.713 kb on + strand, within BBR_RS11630 at 365.716 kb on - strand, within BBR_RS11630 at 365.727 kb on - strand, within BBR_RS11630 at 365.727 kb on - strand, within BBR_RS11630 at 365.738 kb on + strand, within BBR_RS11630 at 365.752 kb on + strand, within BBR_RS11630 at 365.757 kb on + strand, within BBR_RS11630 at 365.757 kb on + strand, within BBR_RS11630 at 365.757 kb on + strand, within BBR_RS11630 at 365.757 kb on + strand, within BBR_RS11630 at 365.760 kb on - strand, within BBR_RS11630 at 365.760 kb on - strand, within BBR_RS11630 at 365.762 kb on + strand, within BBR_RS11630 at 365.762 kb on + strand, within BBR_RS11630 at 365.763 kb on - strand, within BBR_RS11630 at 365.765 kb on - strand, within BBR_RS11630 at 365.765 kb on - strand, within BBR_RS11630 at 365.765 kb on - strand, within BBR_RS11630 at 365.765 kb on - strand, within BBR_RS11630 at 365.765 kb on - strand, within BBR_RS11630 at 365.766 kb on + strand, within BBR_RS11630 at 365.766 kb on + strand, within BBR_RS11630 at 365.770 kb on - strand, within BBR_RS11630 at 365.777 kb on + strand, within BBR_RS11630 at 365.777 kb on + strand, within BBR_RS11630 at 365.777 kb on + strand, within BBR_RS11630 at 365.777 kb on + strand, within BBR_RS11630 at 365.780 kb on - strand, within BBR_RS11630 at 365.785 kb on - strand, within BBR_RS11630 at 365.785 kb on - strand, within BBR_RS11630 at 365.785 kb on - strand, within BBR_RS11630 at 365.786 kb on - strand, within BBR_RS11630 at 365.786 kb on - strand, within BBR_RS11630
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; treatment=Methotrexate; mouse17; day5 remove 363,582 + BBR_RS11620 0.69 +0.1 363,582 + BBR_RS11620 0.69 +1.1 363,590 - BBR_RS11620 0.70 -1.8 363,590 - BBR_RS11620 0.70 -0.1 363,590 - BBR_RS11620 0.70 -1.0 363,590 - BBR_RS11620 0.70 -1.6 363,590 - BBR_RS11620 0.70 -0.7 363,590 - BBR_RS11620 0.70 -1.5 363,642 - BBR_RS11620 0.74 +0.4 363,657 - BBR_RS11620 0.75 -2.2 363,685 - BBR_RS11620 0.78 +0.9 363,687 + BBR_RS11620 0.78 -0.9 363,688 + BBR_RS11620 0.78 -1.2 363,688 + BBR_RS11620 0.78 -1.5 363,688 + BBR_RS11620 0.78 -1.9 363,688 + BBR_RS11620 0.78 +3.8 363,689 + BBR_RS11620 0.78 +0.1 363,751 - BBR_RS11620 0.84 +1.7 363,815 - BBR_RS11620 0.89 -1.0 363,826 - +1.6 363,860 - -0.6 363,991 + +0.1 363,999 - -1.7 364,009 - +1.5 364,064 - +1.5 364,088 - -1.3 364,091 + -1.2 364,094 + +0.1 364,099 - +1.2 364,102 - -0.5 364,102 - -0.3 364,108 + +4.2 364,121 - +1.2 364,166 - +1.7 364,171 - +0.0 364,188 + +1.8 364,188 + -1.9 364,188 + +0.8 364,188 + -0.2 364,191 + -0.4 364,204 + -1.6 364,226 + +0.9 364,236 + -1.5 364,248 + -0.6 364,254 + -1.5 364,254 + -1.4 364,259 + -1.2 364,259 + +0.3 364,264 + +1.7 364,267 - -1.6 364,272 - -1.4 364,273 + -0.6 364,309 + -2.0 364,312 - -0.6 364,317 - +1.0 364,325 + -1.1 364,348 - +1.5 364,350 + +0.6 364,358 - -0.0 364,414 - -1.3 364,414 - +0.1 364,430 + +1.1 364,437 + -0.6 364,466 + +1.3 364,483 - +0.5 364,485 - -0.3 364,499 - -1.0 364,539 + +0.4 364,548 + +2.9 364,548 + +0.5 364,548 + -0.7 364,564 - +0.7 364,565 - +0.2 364,599 + -1.6 364,609 + BBR_RS11625 0.13 +0.2 364,609 + BBR_RS11625 0.13 -0.5 364,614 + BBR_RS11625 0.15 -1.2 364,614 + BBR_RS11625 0.15 +0.6 364,614 + BBR_RS11625 0.15 +0.3 364,639 + BBR_RS11625 0.27 +0.4 364,640 + BBR_RS11625 0.27 +1.7 364,640 + BBR_RS11625 0.27 -0.9 364,640 + BBR_RS11625 0.27 +1.1 364,643 - BBR_RS11625 0.28 +3.2 364,643 - BBR_RS11625 0.28 +3.1 364,648 - BBR_RS11625 0.31 +0.8 364,688 - BBR_RS11625 0.49 -1.6 364,694 - BBR_RS11625 0.51 +3.7 364,710 + BBR_RS11625 0.59 -1.7 364,710 + BBR_RS11625 0.59 -1.4 364,719 + BBR_RS11625 0.63 -0.1 364,769 + BBR_RS11625 0.85 +2.9 364,770 + BBR_RS11625 0.86 -2.0 364,777 - BBR_RS11625 0.89 +0.1 364,777 - BBR_RS11625 0.89 +1.3 364,778 - BBR_RS11625 0.89 +1.7 364,778 - BBR_RS11625 0.89 -2.1 364,859 + +1.4 364,859 + -2.2 364,905 + +1.2 364,906 + +0.1 364,909 + +0.1 364,909 + +1.7 364,913 - +0.7 364,913 - -1.2 364,925 + -0.3 364,925 + -0.5 364,959 + +1.3 364,981 - +2.7 365,007 + +0.1 365,064 + -0.7 365,064 + +1.0 365,065 + -0.5 365,072 - -0.1 365,072 - -0.7 365,089 + -0.8 365,089 + +0.5 365,091 + -0.4 365,091 + -0.2 365,091 + +0.7 365,141 + +0.7 365,141 + -1.0 365,141 + -1.3 365,141 + +0.7 365,141 - -0.1 365,144 - +0.5 365,149 - -1.8 365,149 - -1.0 365,149 - -2.1 365,159 + -1.1 365,159 + +0.7 365,159 + -0.1 365,167 - +3.4 365,167 - -0.5 365,167 - -0.1 365,167 - -1.3 365,167 - -0.8 365,167 - -1.7 365,172 - -1.8 365,179 + -2.1 365,181 + -0.0 365,185 - -0.3 365,187 - +1.1 365,187 - -0.9 365,190 + +3.3 365,197 + +1.7 365,198 - -1.4 365,214 + -1.5 365,214 + -0.3 365,236 + +0.7 365,236 + -0.6 365,247 + +3.0 365,247 + +1.3 365,252 + -0.7 365,255 - +0.4 365,260 - +0.3 365,260 - +0.5 365,287 + -0.9 365,298 - +1.0 365,299 - +0.1 365,402 - -2.0 365,402 - +0.1 365,405 + +0.8 365,415 + +2.7 365,425 + -1.5 365,425 + +0.4 365,433 - -1.8 365,443 + +1.3 365,443 + +0.0 365,443 + -0.7 365,443 + +1.1 365,448 + +1.1 365,459 - -0.4 365,510 - +1.1 365,510 - +3.7 365,516 + +0.1 365,556 - BBR_RS11630 0.10 -0.2 365,560 - BBR_RS11630 0.10 +0.2 365,613 + BBR_RS11630 0.15 -0.7 365,618 + BBR_RS11630 0.15 +0.5 365,646 + BBR_RS11630 0.17 -0.0 365,690 + BBR_RS11630 0.21 +3.1 365,690 + BBR_RS11630 0.21 -1.1 365,690 + BBR_RS11630 0.21 +0.7 365,698 - BBR_RS11630 0.22 -2.1 365,698 - BBR_RS11630 0.22 -0.2 365,699 + BBR_RS11630 0.22 -1.9 365,708 + BBR_RS11630 0.23 -1.8 365,708 + BBR_RS11630 0.23 -1.7 365,713 + BBR_RS11630 0.23 +3.0 365,716 - BBR_RS11630 0.23 -1.4 365,727 - BBR_RS11630 0.24 +0.5 365,727 - BBR_RS11630 0.24 -1.8 365,738 + BBR_RS11630 0.25 +0.4 365,752 + BBR_RS11630 0.26 +1.3 365,757 + BBR_RS11630 0.27 -1.0 365,757 + BBR_RS11630 0.27 +1.0 365,757 + BBR_RS11630 0.27 +0.7 365,757 + BBR_RS11630 0.27 -0.6 365,760 - BBR_RS11630 0.27 -0.3 365,760 - BBR_RS11630 0.27 -0.4 365,762 + BBR_RS11630 0.27 -0.4 365,762 + BBR_RS11630 0.27 -0.5 365,763 - BBR_RS11630 0.27 +2.3 365,765 - BBR_RS11630 0.27 +2.8 365,765 - BBR_RS11630 0.27 +1.1 365,765 - BBR_RS11630 0.27 -0.0 365,765 - BBR_RS11630 0.27 +1.1 365,765 - BBR_RS11630 0.27 +2.7 365,766 + BBR_RS11630 0.27 +1.5 365,766 + BBR_RS11630 0.27 -1.2 365,770 - BBR_RS11630 0.28 +0.9 365,777 + BBR_RS11630 0.28 -0.3 365,777 + BBR_RS11630 0.28 +0.4 365,777 + BBR_RS11630 0.28 -0.1 365,777 + BBR_RS11630 0.28 +0.9 365,780 - BBR_RS11630 0.29 +1.2 365,785 - BBR_RS11630 0.29 -2.8 365,785 - BBR_RS11630 0.29 +0.4 365,785 - BBR_RS11630 0.29 +0.3 365,786 - BBR_RS11630 0.29 -0.1 365,786 - BBR_RS11630 0.29 +0.8
Or see this region's nucleotide sequence