Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS34290

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS34285 and RR42_RS34290 are separated by 9 nucleotidesRR42_RS34290 and RR42_RS34295 are separated by 196 nucleotides RR42_RS34285: RR42_RS34285 - alpha/beta hydrolase, at 3,119,444 to 3,120,400 _RS34285 RR42_RS34290: RR42_RS34290 - penicillin-binding protein, at 3,120,410 to 3,122,338 _RS34290 RR42_RS34295: RR42_RS34295 - arsenic transporter, at 3,122,535 to 3,123,794 _RS34295 Position (kb) 3120 3121 3122 3123Strain fitness (log2 ratio) -2 -1 0 1 2at 3119.414 kb on - strandat 3119.414 kb on - strandat 3119.516 kb on + strandat 3119.517 kb on - strandat 3119.633 kb on + strand, within RR42_RS34285at 3119.633 kb on + strand, within RR42_RS34285at 3119.634 kb on - strand, within RR42_RS34285at 3119.634 kb on - strand, within RR42_RS34285at 3119.717 kb on + strand, within RR42_RS34285at 3119.718 kb on - strand, within RR42_RS34285at 3119.742 kb on + strand, within RR42_RS34285at 3119.742 kb on + strand, within RR42_RS34285at 3119.743 kb on - strand, within RR42_RS34285at 3119.759 kb on + strand, within RR42_RS34285at 3119.759 kb on + strand, within RR42_RS34285at 3119.759 kb on + strand, within RR42_RS34285at 3119.759 kb on + strand, within RR42_RS34285at 3119.760 kb on - strand, within RR42_RS34285at 3119.760 kb on - strand, within RR42_RS34285at 3119.760 kb on - strand, within RR42_RS34285at 3119.943 kb on + strand, within RR42_RS34285at 3119.944 kb on - strand, within RR42_RS34285at 3120.398 kb on + strandat 3120.399 kb on - strandat 3120.399 kb on - strandat 3120.474 kb on + strandat 3120.474 kb on + strandat 3120.475 kb on - strandat 3120.475 kb on - strandat 3120.566 kb on - strandat 3120.566 kb on - strandat 3120.683 kb on + strand, within RR42_RS34290at 3120.684 kb on - strand, within RR42_RS34290at 3120.737 kb on - strand, within RR42_RS34290at 3120.750 kb on - strand, within RR42_RS34290at 3120.798 kb on - strand, within RR42_RS34290at 3120.798 kb on - strand, within RR42_RS34290at 3120.896 kb on + strand, within RR42_RS34290at 3120.896 kb on + strand, within RR42_RS34290at 3120.896 kb on + strand, within RR42_RS34290at 3120.896 kb on + strand, within RR42_RS34290at 3120.897 kb on - strand, within RR42_RS34290at 3120.897 kb on - strand, within RR42_RS34290at 3120.929 kb on + strand, within RR42_RS34290at 3120.930 kb on - strand, within RR42_RS34290at 3120.930 kb on - strand, within RR42_RS34290at 3120.956 kb on + strand, within RR42_RS34290at 3120.957 kb on - strand, within RR42_RS34290at 3121.079 kb on + strand, within RR42_RS34290at 3121.079 kb on + strand, within RR42_RS34290at 3121.079 kb on + strand, within RR42_RS34290at 3121.079 kb on + strand, within RR42_RS34290at 3121.079 kb on + strand, within RR42_RS34290at 3121.079 kb on + strand, within RR42_RS34290at 3121.080 kb on - strand, within RR42_RS34290at 3121.080 kb on - strand, within RR42_RS34290at 3121.080 kb on - strand, within RR42_RS34290at 3121.128 kb on - strand, within RR42_RS34290at 3121.200 kb on - strand, within RR42_RS34290at 3121.230 kb on - strand, within RR42_RS34290at 3121.253 kb on + strand, within RR42_RS34290at 3121.253 kb on + strand, within RR42_RS34290at 3121.274 kb on + strand, within RR42_RS34290at 3121.274 kb on + strand, within RR42_RS34290at 3121.275 kb on - strand, within RR42_RS34290at 3121.275 kb on - strand, within RR42_RS34290at 3121.275 kb on - strand, within RR42_RS34290at 3121.275 kb on - strand, within RR42_RS34290at 3121.341 kb on - strand, within RR42_RS34290at 3121.512 kb on - strand, within RR42_RS34290at 3121.512 kb on - strand, within RR42_RS34290at 3121.713 kb on - strand, within RR42_RS34290at 3121.754 kb on + strand, within RR42_RS34290at 3121.811 kb on + strand, within RR42_RS34290at 3121.812 kb on - strand, within RR42_RS34290at 3121.850 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.946 kb on + strand, within RR42_RS34290at 3121.947 kb on - strand, within RR42_RS34290at 3121.947 kb on - strand, within RR42_RS34290at 3121.947 kb on - strand, within RR42_RS34290at 3122.009 kb on + strand, within RR42_RS34290at 3122.009 kb on + strand, within RR42_RS34290at 3122.009 kb on + strand, within RR42_RS34290at 3122.010 kb on - strand, within RR42_RS34290at 3122.051 kb on - strand, within RR42_RS34290at 3122.186 kb on + strandat 3122.186 kb on + strandat 3122.186 kb on + strandat 3122.186 kb on + strandat 3122.280 kb on - strandat 3122.380 kb on + strandat 3122.498 kb on - strandat 3122.550 kb on + strandat 3122.550 kb on + strandat 3122.550 kb on + strandat 3122.659 kb on + strandat 3122.660 kb on - strandat 3122.715 kb on + strand, within RR42_RS34295at 3122.715 kb on + strand, within RR42_RS34295at 3122.716 kb on - strand, within RR42_RS34295at 3122.716 kb on - strand, within RR42_RS34295at 3122.716 kb on - strand, within RR42_RS34295at 3122.724 kb on + strand, within RR42_RS34295at 3122.724 kb on + strand, within RR42_RS34295at 3122.725 kb on - strand, within RR42_RS34295at 3122.791 kb on + strand, within RR42_RS34295at 3122.792 kb on - strand, within RR42_RS34295at 3122.792 kb on - strand, within RR42_RS34295at 3122.792 kb on - strand, within RR42_RS34295at 3122.851 kb on - strand, within RR42_RS34295at 3122.851 kb on - strand, within RR42_RS34295at 3122.965 kb on - strand, within RR42_RS34295at 3122.970 kb on + strand, within RR42_RS34295at 3122.970 kb on + strand, within RR42_RS34295at 3122.970 kb on + strand, within RR42_RS34295at 3122.970 kb on + strand, within RR42_RS34295at 3122.970 kb on + strand, within RR42_RS34295at 3122.971 kb on - strand, within RR42_RS34295at 3123.133 kb on - strand, within RR42_RS34295

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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3,119,414 - -0.3
3,119,414 - -0.1
3,119,516 + +0.6
3,119,517 - -0.7
3,119,633 + RR42_RS34285 0.20 +0.5
3,119,633 + RR42_RS34285 0.20 -0.8
3,119,634 - RR42_RS34285 0.20 -0.5
3,119,634 - RR42_RS34285 0.20 -1.4
3,119,717 + RR42_RS34285 0.29 -0.9
3,119,718 - RR42_RS34285 0.29 -0.2
3,119,742 + RR42_RS34285 0.31 +0.6
3,119,742 + RR42_RS34285 0.31 +0.5
3,119,743 - RR42_RS34285 0.31 -0.6
3,119,759 + RR42_RS34285 0.33 +1.5
3,119,759 + RR42_RS34285 0.33 -1.1
3,119,759 + RR42_RS34285 0.33 +0.4
3,119,759 + RR42_RS34285 0.33 -0.2
3,119,760 - RR42_RS34285 0.33 +0.8
3,119,760 - RR42_RS34285 0.33 -0.1
3,119,760 - RR42_RS34285 0.33 +0.0
3,119,943 + RR42_RS34285 0.52 +0.1
3,119,944 - RR42_RS34285 0.52 +0.5
3,120,398 + -0.8
3,120,399 - -0.3
3,120,399 - -0.7
3,120,474 + -0.1
3,120,474 + +0.4
3,120,475 - -0.1
3,120,475 - +0.2
3,120,566 - +0.5
3,120,566 - -1.4
3,120,683 + RR42_RS34290 0.14 +0.2
3,120,684 - RR42_RS34290 0.14 -0.8
3,120,737 - RR42_RS34290 0.17 -0.0
3,120,750 - RR42_RS34290 0.18 -0.2
3,120,798 - RR42_RS34290 0.20 -1.8
3,120,798 - RR42_RS34290 0.20 +0.9
3,120,896 + RR42_RS34290 0.25 +0.4
3,120,896 + RR42_RS34290 0.25 +0.1
3,120,896 + RR42_RS34290 0.25 +0.7
3,120,896 + RR42_RS34290 0.25 -0.2
3,120,897 - RR42_RS34290 0.25 -0.2
3,120,897 - RR42_RS34290 0.25 +1.4
3,120,929 + RR42_RS34290 0.27 -0.5
3,120,930 - RR42_RS34290 0.27 -0.4
3,120,930 - RR42_RS34290 0.27 -0.3
3,120,956 + RR42_RS34290 0.28 -1.6
3,120,957 - RR42_RS34290 0.28 +0.7
3,121,079 + RR42_RS34290 0.35 +0.2
3,121,079 + RR42_RS34290 0.35 -0.5
3,121,079 + RR42_RS34290 0.35 -0.8
3,121,079 + RR42_RS34290 0.35 -2.4
3,121,079 + RR42_RS34290 0.35 +1.4
3,121,079 + RR42_RS34290 0.35 -0.4
3,121,080 - RR42_RS34290 0.35 +0.2
3,121,080 - RR42_RS34290 0.35 +0.4
3,121,080 - RR42_RS34290 0.35 +0.1
3,121,128 - RR42_RS34290 0.37 -1.0
3,121,200 - RR42_RS34290 0.41 +0.1
3,121,230 - RR42_RS34290 0.43 -0.6
3,121,253 + RR42_RS34290 0.44 +0.4
3,121,253 + RR42_RS34290 0.44 -0.1
3,121,274 + RR42_RS34290 0.45 +0.1
3,121,274 + RR42_RS34290 0.45 -0.3
3,121,275 - RR42_RS34290 0.45 -0.0
3,121,275 - RR42_RS34290 0.45 +0.5
3,121,275 - RR42_RS34290 0.45 -0.6
3,121,275 - RR42_RS34290 0.45 -0.9
3,121,341 - RR42_RS34290 0.48 -0.0
3,121,512 - RR42_RS34290 0.57 -1.6
3,121,512 - RR42_RS34290 0.57 +0.3
3,121,713 - RR42_RS34290 0.68 -1.1
3,121,754 + RR42_RS34290 0.70 -0.2
3,121,811 + RR42_RS34290 0.73 -1.2
3,121,812 - RR42_RS34290 0.73 +0.1
3,121,850 + RR42_RS34290 0.75 -2.6
3,121,946 + RR42_RS34290 0.80 -0.2
3,121,946 + RR42_RS34290 0.80 +0.4
3,121,946 + RR42_RS34290 0.80 -0.2
3,121,946 + RR42_RS34290 0.80 -0.5
3,121,946 + RR42_RS34290 0.80 -0.9
3,121,946 + RR42_RS34290 0.80 -1.0
3,121,946 + RR42_RS34290 0.80 -0.4
3,121,947 - RR42_RS34290 0.80 +0.4
3,121,947 - RR42_RS34290 0.80 -0.7
3,121,947 - RR42_RS34290 0.80 +0.1
3,122,009 + RR42_RS34290 0.83 -1.5
3,122,009 + RR42_RS34290 0.83 -1.9
3,122,009 + RR42_RS34290 0.83 -0.1
3,122,010 - RR42_RS34290 0.83 +2.4
3,122,051 - RR42_RS34290 0.85 +0.4
3,122,186 + +0.2
3,122,186 + -0.3
3,122,186 + +0.1
3,122,186 + +0.4
3,122,280 - +0.2
3,122,380 + +0.4
3,122,498 - -0.9
3,122,550 + -0.6
3,122,550 + +0.4
3,122,550 + +0.2
3,122,659 + -1.2
3,122,660 - +0.4
3,122,715 + RR42_RS34295 0.14 +0.4
3,122,715 + RR42_RS34295 0.14 +1.5
3,122,716 - RR42_RS34295 0.14 -1.1
3,122,716 - RR42_RS34295 0.14 +0.9
3,122,716 - RR42_RS34295 0.14 +0.9
3,122,724 + RR42_RS34295 0.15 -1.0
3,122,724 + RR42_RS34295 0.15 -0.1
3,122,725 - RR42_RS34295 0.15 -1.4
3,122,791 + RR42_RS34295 0.20 -0.4
3,122,792 - RR42_RS34295 0.20 -0.0
3,122,792 - RR42_RS34295 0.20 +0.3
3,122,792 - RR42_RS34295 0.20 -0.3
3,122,851 - RR42_RS34295 0.25 +0.1
3,122,851 - RR42_RS34295 0.25 -0.8
3,122,965 - RR42_RS34295 0.34 -2.0
3,122,970 + RR42_RS34295 0.35 +0.3
3,122,970 + RR42_RS34295 0.35 +0.7
3,122,970 + RR42_RS34295 0.35 +2.4
3,122,970 + RR42_RS34295 0.35 +0.4
3,122,970 + RR42_RS34295 0.35 +0.0
3,122,971 - RR42_RS34295 0.35 +0.2
3,123,133 - RR42_RS34295 0.47 +0.4

Or see this region's nucleotide sequence