Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24090

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24085 and RR42_RS24090 are separated by 111 nucleotidesRR42_RS24090 and RR42_RS24095 are separated by 76 nucleotidesRR42_RS24095 and RR42_RS24100 are separated by 115 nucleotides RR42_RS24085: RR42_RS24085 - hypothetical protein, at 728,407 to 729,375 _RS24085 RR42_RS24090: RR42_RS24090 - quinone oxidoreductase, at 729,487 to 730,479 _RS24090 RR42_RS24095: RR42_RS24095 - hypothetical protein, at 730,556 to 730,885 _RS24095 RR42_RS24100: RR42_RS24100 - hypothetical protein, at 731,001 to 731,516 _RS24100 Position (kb) 729 730 731Strain fitness (log2 ratio) -2 -1 0 1 2at 728.494 kb on - strandat 728.659 kb on + strand, within RR42_RS24085at 728.659 kb on + strand, within RR42_RS24085at 728.660 kb on - strand, within RR42_RS24085at 728.662 kb on - strand, within RR42_RS24085at 728.708 kb on + strand, within RR42_RS24085at 728.709 kb on - strand, within RR42_RS24085at 728.709 kb on - strand, within RR42_RS24085at 728.709 kb on - strand, within RR42_RS24085at 728.711 kb on - strand, within RR42_RS24085at 728.711 kb on - strand, within RR42_RS24085at 728.711 kb on - strand, within RR42_RS24085at 728.713 kb on - strand, within RR42_RS24085at 728.786 kb on + strand, within RR42_RS24085at 728.817 kb on + strand, within RR42_RS24085at 728.818 kb on - strand, within RR42_RS24085at 728.864 kb on - strand, within RR42_RS24085at 728.937 kb on + strand, within RR42_RS24085at 728.950 kb on + strand, within RR42_RS24085at 729.023 kb on + strand, within RR42_RS24085at 729.024 kb on - strand, within RR42_RS24085at 729.078 kb on + strand, within RR42_RS24085at 729.078 kb on + strand, within RR42_RS24085at 729.078 kb on + strand, within RR42_RS24085at 729.079 kb on - strand, within RR42_RS24085at 729.104 kb on + strand, within RR42_RS24085at 729.105 kb on - strand, within RR42_RS24085at 729.105 kb on - strand, within RR42_RS24085at 729.105 kb on - strand, within RR42_RS24085at 729.154 kb on + strand, within RR42_RS24085at 729.154 kb on + strand, within RR42_RS24085at 729.155 kb on - strand, within RR42_RS24085at 729.253 kb on + strand, within RR42_RS24085at 729.254 kb on - strand, within RR42_RS24085at 729.254 kb on - strand, within RR42_RS24085at 729.312 kb on + strandat 729.313 kb on - strandat 729.313 kb on - strandat 729.333 kb on + strandat 729.431 kb on + strandat 729.432 kb on - strandat 729.432 kb on - strandat 729.432 kb on - strandat 729.484 kb on - strandat 729.495 kb on + strandat 729.495 kb on + strandat 729.496 kb on - strandat 729.512 kb on - strandat 729.512 kb on - strandat 729.584 kb on + strandat 729.585 kb on - strandat 729.585 kb on - strandat 729.585 kb on - strandat 729.585 kb on - strandat 729.640 kb on + strand, within RR42_RS24090at 729.641 kb on - strand, within RR42_RS24090at 729.654 kb on + strand, within RR42_RS24090at 729.658 kb on + strand, within RR42_RS24090at 729.658 kb on + strand, within RR42_RS24090at 729.659 kb on - strand, within RR42_RS24090at 729.666 kb on - strand, within RR42_RS24090at 729.680 kb on + strand, within RR42_RS24090at 729.710 kb on + strand, within RR42_RS24090at 729.710 kb on + strand, within RR42_RS24090at 729.710 kb on + strand, within RR42_RS24090at 729.711 kb on - strand, within RR42_RS24090at 729.717 kb on - strand, within RR42_RS24090at 729.791 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.822 kb on - strand, within RR42_RS24090at 729.842 kb on - strand, within RR42_RS24090at 730.026 kb on + strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.027 kb on - strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.200 kb on + strand, within RR42_RS24090at 730.210 kb on + strand, within RR42_RS24090at 730.210 kb on + strand, within RR42_RS24090at 730.230 kb on + strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.231 kb on - strand, within RR42_RS24090at 730.326 kb on - strand, within RR42_RS24090at 730.326 kb on - strand, within RR42_RS24090at 730.396 kb on + strandat 730.396 kb on + strandat 730.396 kb on + strandat 730.451 kb on + strandat 730.452 kb on - strandat 730.452 kb on - strandat 730.456 kb on - strandat 730.496 kb on + strandat 730.497 kb on - strandat 730.497 kb on - strandat 730.640 kb on + strand, within RR42_RS24095at 730.640 kb on + strand, within RR42_RS24095at 730.640 kb on + strand, within RR42_RS24095at 730.641 kb on - strand, within RR42_RS24095at 730.641 kb on - strand, within RR42_RS24095at 730.654 kb on - strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.673 kb on + strand, within RR42_RS24095at 730.674 kb on - strand, within RR42_RS24095at 730.734 kb on + strand, within RR42_RS24095at 730.735 kb on - strand, within RR42_RS24095at 730.807 kb on + strand, within RR42_RS24095at 730.807 kb on + strand, within RR42_RS24095at 730.807 kb on + strand, within RR42_RS24095at 730.895 kb on - strandat 730.906 kb on - strandat 730.906 kb on - strandat 731.137 kb on + strand, within RR42_RS24100at 731.220 kb on + strand, within RR42_RS24100at 731.232 kb on + strand, within RR42_RS24100at 731.232 kb on + strand, within RR42_RS24100at 731.233 kb on - strand, within RR42_RS24100at 731.233 kb on - strand, within RR42_RS24100at 731.330 kb on + strand, within RR42_RS24100at 731.331 kb on - strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.458 kb on + strand, within RR42_RS24100

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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728,494 - +0.8
728,659 + RR42_RS24085 0.26 -1.6
728,659 + RR42_RS24085 0.26 -1.4
728,660 - RR42_RS24085 0.26 +0.3
728,662 - RR42_RS24085 0.26 -0.0
728,708 + RR42_RS24085 0.31 -0.3
728,709 - RR42_RS24085 0.31 +0.4
728,709 - RR42_RS24085 0.31 +0.2
728,709 - RR42_RS24085 0.31 +0.8
728,711 - RR42_RS24085 0.31 +0.1
728,711 - RR42_RS24085 0.31 +0.6
728,711 - RR42_RS24085 0.31 +0.2
728,713 - RR42_RS24085 0.32 -0.3
728,786 + RR42_RS24085 0.39 +0.1
728,817 + RR42_RS24085 0.42 -0.6
728,818 - RR42_RS24085 0.42 -0.7
728,864 - RR42_RS24085 0.47 +0.0
728,937 + RR42_RS24085 0.55 -1.5
728,950 + RR42_RS24085 0.56 -0.8
729,023 + RR42_RS24085 0.64 +0.1
729,024 - RR42_RS24085 0.64 -1.0
729,078 + RR42_RS24085 0.69 +0.1
729,078 + RR42_RS24085 0.69 -0.8
729,078 + RR42_RS24085 0.69 +0.5
729,079 - RR42_RS24085 0.69 -0.4
729,104 + RR42_RS24085 0.72 -0.6
729,105 - RR42_RS24085 0.72 +0.4
729,105 - RR42_RS24085 0.72 -0.4
729,105 - RR42_RS24085 0.72 +0.4
729,154 + RR42_RS24085 0.77 +1.6
729,154 + RR42_RS24085 0.77 -1.0
729,155 - RR42_RS24085 0.77 -0.5
729,253 + RR42_RS24085 0.87 -0.0
729,254 - RR42_RS24085 0.87 +0.5
729,254 - RR42_RS24085 0.87 +1.2
729,312 + -1.8
729,313 - +1.7
729,313 - -0.6
729,333 + +0.5
729,431 + -0.0
729,432 - +0.0
729,432 - +2.1
729,432 - -0.8
729,484 - -0.9
729,495 + +1.2
729,495 + +0.0
729,496 - +1.3
729,512 - -1.1
729,512 - -0.4
729,584 + -0.0
729,585 - +0.5
729,585 - -1.2
729,585 - -0.6
729,585 - +0.4
729,640 + RR42_RS24090 0.15 +0.1
729,641 - RR42_RS24090 0.16 -1.9
729,654 + RR42_RS24090 0.17 +0.8
729,658 + RR42_RS24090 0.17 +1.1
729,658 + RR42_RS24090 0.17 +0.2
729,659 - RR42_RS24090 0.17 +0.0
729,666 - RR42_RS24090 0.18 -0.3
729,680 + RR42_RS24090 0.19 -1.5
729,710 + RR42_RS24090 0.22 -1.3
729,710 + RR42_RS24090 0.22 -0.2
729,710 + RR42_RS24090 0.22 +0.2
729,711 - RR42_RS24090 0.23 -0.5
729,717 - RR42_RS24090 0.23 -0.4
729,791 - RR42_RS24090 0.31 -1.1
729,822 - RR42_RS24090 0.34 +0.4
729,822 - RR42_RS24090 0.34 -0.6
729,822 - RR42_RS24090 0.34 +1.4
729,822 - RR42_RS24090 0.34 +0.2
729,822 - RR42_RS24090 0.34 -0.4
729,842 - RR42_RS24090 0.36 +0.4
730,026 + RR42_RS24090 0.54 -0.7
730,027 - RR42_RS24090 0.54 -0.6
730,027 - RR42_RS24090 0.54 -1.0
730,027 - RR42_RS24090 0.54 -1.0
730,200 + RR42_RS24090 0.72 -0.4
730,200 + RR42_RS24090 0.72 -1.2
730,200 + RR42_RS24090 0.72 +0.1
730,210 + RR42_RS24090 0.73 -0.9
730,210 + RR42_RS24090 0.73 -0.2
730,230 + RR42_RS24090 0.75 -0.7
730,231 - RR42_RS24090 0.75 -0.0
730,231 - RR42_RS24090 0.75 +1.3
730,231 - RR42_RS24090 0.75 +0.1
730,326 - RR42_RS24090 0.84 -0.0
730,326 - RR42_RS24090 0.84 -0.4
730,396 + -0.4
730,396 + -0.8
730,396 + +0.2
730,451 + -2.3
730,452 - +0.4
730,452 - +0.7
730,456 - -0.3
730,496 + -1.1
730,497 - -0.6
730,497 - +0.8
730,640 + RR42_RS24095 0.25 +1.1
730,640 + RR42_RS24095 0.25 -0.4
730,640 + RR42_RS24095 0.25 +0.9
730,641 - RR42_RS24095 0.26 -0.0
730,641 - RR42_RS24095 0.26 -0.0
730,654 - RR42_RS24095 0.30 +0.1
730,673 + RR42_RS24095 0.35 -0.4
730,673 + RR42_RS24095 0.35 -0.8
730,673 + RR42_RS24095 0.35 +0.0
730,673 + RR42_RS24095 0.35 -0.3
730,674 - RR42_RS24095 0.36 -0.3
730,734 + RR42_RS24095 0.54 -0.8
730,735 - RR42_RS24095 0.54 -0.6
730,807 + RR42_RS24095 0.76 -0.8
730,807 + RR42_RS24095 0.76 +0.1
730,807 + RR42_RS24095 0.76 -1.8
730,895 - +0.3
730,906 - +0.2
730,906 - +0.9
731,137 + RR42_RS24100 0.26 -0.1
731,220 + RR42_RS24100 0.42 +0.5
731,232 + RR42_RS24100 0.45 -0.2
731,232 + RR42_RS24100 0.45 +0.7
731,233 - RR42_RS24100 0.45 -1.0
731,233 - RR42_RS24100 0.45 +1.3
731,330 + RR42_RS24100 0.64 +0.3
731,331 - RR42_RS24100 0.64 -0.2
731,352 + RR42_RS24100 0.68 -0.7
731,352 + RR42_RS24100 0.68 +0.3
731,352 + RR42_RS24100 0.68 -0.4
731,458 + RR42_RS24100 0.89 +0.7

Or see this region's nucleotide sequence