Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23340 and RR42_RS23345 are separated by 104 nucleotides RR42_RS23345 and RR42_RS23350 are separated by 296 nucleotides
RR42_RS23340: RR42_RS23340 - RNA ligase, at 567,044 to 568,270
_RS23340
RR42_RS23345: RR42_RS23345 - hypothetical protein, at 568,375 to 569,220
_RS23345
RR42_RS23350: RR42_RS23350 - flagellar biosynthesis protein FliR, at 569,517 to 570,302
_RS23350
Position (kb) 568
569
570 Strain fitness (log2 ratio) -1
0
1
2
3 at 567.497 kb on + strand, within RR42_RS23340 at 567.498 kb on - strand, within RR42_RS23340 at 567.652 kb on + strand, within RR42_RS23340 at 567.750 kb on - strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.886 kb on + strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.887 kb on - strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 567.890 kb on + strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.005 kb on - strand, within RR42_RS23340 at 568.182 kb on - strand at 568.486 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.667 kb on + strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.668 kb on - strand, within RR42_RS23345 at 568.862 kb on - strand, within RR42_RS23345 at 569.202 kb on - strand at 569.358 kb on + strand at 569.358 kb on + strand at 569.435 kb on + strand at 569.435 kb on + strand at 569.466 kb on + strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.467 kb on - strand at 569.484 kb on - strand at 569.553 kb on - strand at 569.959 kb on + strand, within RR42_RS23350 at 569.959 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.066 kb on + strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350 at 570.067 kb on - strand, within RR42_RS23350
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 567,497 + RR42_RS23340 0.37 +0.2 567,498 - RR42_RS23340 0.37 +0.6 567,652 + RR42_RS23340 0.50 +2.9 567,750 - RR42_RS23340 0.58 -0.6 567,886 + RR42_RS23340 0.69 -0.3 567,886 + RR42_RS23340 0.69 +0.7 567,887 - RR42_RS23340 0.69 +0.3 567,887 - RR42_RS23340 0.69 -0.0 567,887 - RR42_RS23340 0.69 +0.3 567,890 + RR42_RS23340 0.69 +2.0 567,890 + RR42_RS23340 0.69 -0.3 567,890 + RR42_RS23340 0.69 -0.7 568,005 - RR42_RS23340 0.78 -0.4 568,005 - RR42_RS23340 0.78 +2.1 568,182 - -0.1 568,486 + RR42_RS23345 0.13 +0.7 568,667 + RR42_RS23345 0.35 +0.5 568,667 + RR42_RS23345 0.35 +0.2 568,667 + RR42_RS23345 0.35 +0.8 568,667 + RR42_RS23345 0.35 +3.0 568,668 - RR42_RS23345 0.35 -1.2 568,668 - RR42_RS23345 0.35 +0.2 568,668 - RR42_RS23345 0.35 -0.8 568,862 - RR42_RS23345 0.58 +0.7 569,202 - +0.1 569,358 + -0.7 569,358 + -0.2 569,435 + -0.9 569,435 + -1.6 569,466 + +1.6 569,467 - +0.6 569,467 - +0.4 569,467 - +0.1 569,467 - -0.3 569,484 - +2.5 569,553 - +0.2 569,959 + RR42_RS23350 0.56 -0.8 569,959 + RR42_RS23350 0.56 -0.1 570,066 + RR42_RS23350 0.70 -0.4 570,066 + RR42_RS23350 0.70 -0.4 570,066 + RR42_RS23350 0.70 +1.2 570,067 - RR42_RS23350 0.70 +1.3 570,067 - RR42_RS23350 0.70 +0.3
Or see this region's nucleotide sequence