Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21805

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21795 and RR42_RS21800 overlap by 4 nucleotidesRR42_RS21800 and RR42_RS21805 overlap by 4 nucleotidesRR42_RS21805 and RR42_RS21810 are separated by 2 nucleotides RR42_RS21795: RR42_RS21795 - mannosyltransferase, at 219,010 to 219,744 _RS21795 RR42_RS21800: RR42_RS21800 - branched-chain amino acid ABC transporter substrate-binding protein, at 219,741 to 220,499 _RS21800 RR42_RS21805: RR42_RS21805 - branched-chain amino acid ABC transporter permease, at 220,496 to 221,791 _RS21805 RR42_RS21810: RR42_RS21810 - ABC transporter permease, at 221,794 to 222,735 _RS21810 Position (kb) 220 221 222Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.500 kb on + strand, within RR42_RS21795at 219.501 kb on - strand, within RR42_RS21795at 219.501 kb on - strand, within RR42_RS21795at 219.532 kb on + strand, within RR42_RS21795at 219.533 kb on - strand, within RR42_RS21795at 219.622 kb on + strand, within RR42_RS21795at 219.622 kb on + strand, within RR42_RS21795at 219.623 kb on - strand, within RR42_RS21795at 219.727 kb on + strandat 219.766 kb on + strandat 219.767 kb on - strandat 220.046 kb on - strand, within RR42_RS21800at 220.159 kb on + strand, within RR42_RS21800at 220.160 kb on - strand, within RR42_RS21800at 220.226 kb on + strand, within RR42_RS21800at 220.226 kb on + strand, within RR42_RS21800at 220.227 kb on - strand, within RR42_RS21800at 220.767 kb on - strand, within RR42_RS21805at 220.840 kb on - strand, within RR42_RS21805at 220.840 kb on - strand, within RR42_RS21805at 221.031 kb on + strand, within RR42_RS21805at 221.032 kb on - strand, within RR42_RS21805at 221.032 kb on - strand, within RR42_RS21805at 221.079 kb on + strand, within RR42_RS21805at 221.079 kb on + strand, within RR42_RS21805at 221.079 kb on + strand, within RR42_RS21805at 221.256 kb on + strand, within RR42_RS21805at 221.257 kb on - strand, within RR42_RS21805at 221.298 kb on + strand, within RR42_RS21805at 221.299 kb on - strand, within RR42_RS21805at 221.445 kb on + strand, within RR42_RS21805at 221.446 kb on - strand, within RR42_RS21805at 221.446 kb on - strand, within RR42_RS21805at 221.601 kb on + strand, within RR42_RS21805at 222.047 kb on - strand, within RR42_RS21810at 222.047 kb on - strand, within RR42_RS21810at 222.104 kb on + strand, within RR42_RS21810at 222.104 kb on + strand, within RR42_RS21810at 222.105 kb on - strand, within RR42_RS21810at 222.218 kb on + strand, within RR42_RS21810at 222.218 kb on + strand, within RR42_RS21810at 222.219 kb on - strand, within RR42_RS21810at 222.219 kb on - strand, within RR42_RS21810at 222.219 kb on - strand, within RR42_RS21810at 222.270 kb on - strand, within RR42_RS21810at 222.317 kb on + strand, within RR42_RS21810at 222.317 kb on + strand, within RR42_RS21810at 222.317 kb on + strand, within RR42_RS21810at 222.317 kb on + strand, within RR42_RS21810at 222.318 kb on - strand, within RR42_RS21810at 222.327 kb on - strand, within RR42_RS21810at 222.593 kb on + strand, within RR42_RS21810at 222.594 kb on - strand, within RR42_RS21810at 222.608 kb on + strand, within RR42_RS21810at 222.608 kb on + strand, within RR42_RS21810at 222.608 kb on + strand, within RR42_RS21810at 222.609 kb on - strand, within RR42_RS21810at 222.609 kb on - strand, within RR42_RS21810at 222.696 kb on - strandat 222.728 kb on + strandat 222.728 kb on + strandat 222.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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219,500 + RR42_RS21795 0.67 -1.3
219,501 - RR42_RS21795 0.67 +1.4
219,501 - RR42_RS21795 0.67 +1.7
219,532 + RR42_RS21795 0.71 -1.0
219,533 - RR42_RS21795 0.71 +0.8
219,622 + RR42_RS21795 0.83 -2.8
219,622 + RR42_RS21795 0.83 +1.0
219,623 - RR42_RS21795 0.83 -1.3
219,727 + -1.0
219,766 + +1.6
219,767 - -1.0
220,046 - RR42_RS21800 0.40 -1.1
220,159 + RR42_RS21800 0.55 -0.1
220,160 - RR42_RS21800 0.55 +0.2
220,226 + RR42_RS21800 0.64 -0.8
220,226 + RR42_RS21800 0.64 +0.0
220,227 - RR42_RS21800 0.64 +1.0
220,767 - RR42_RS21805 0.21 -0.2
220,840 - RR42_RS21805 0.27 +0.9
220,840 - RR42_RS21805 0.27 +0.7
221,031 + RR42_RS21805 0.41 -0.6
221,032 - RR42_RS21805 0.41 -1.3
221,032 - RR42_RS21805 0.41 -1.2
221,079 + RR42_RS21805 0.45 +0.6
221,079 + RR42_RS21805 0.45 -0.3
221,079 + RR42_RS21805 0.45 -1.3
221,256 + RR42_RS21805 0.59 +1.3
221,257 - RR42_RS21805 0.59 -0.6
221,298 + RR42_RS21805 0.62 -1.0
221,299 - RR42_RS21805 0.62 -0.9
221,445 + RR42_RS21805 0.73 -0.2
221,446 - RR42_RS21805 0.73 -0.2
221,446 - RR42_RS21805 0.73 -1.6
221,601 + RR42_RS21805 0.85 -0.9
222,047 - RR42_RS21810 0.27 -0.2
222,047 - RR42_RS21810 0.27 -0.3
222,104 + RR42_RS21810 0.33 +0.8
222,104 + RR42_RS21810 0.33 -2.3
222,105 - RR42_RS21810 0.33 -1.1
222,218 + RR42_RS21810 0.45 -0.7
222,218 + RR42_RS21810 0.45 +2.6
222,219 - RR42_RS21810 0.45 -0.3
222,219 - RR42_RS21810 0.45 -1.2
222,219 - RR42_RS21810 0.45 -0.4
222,270 - RR42_RS21810 0.51 -0.8
222,317 + RR42_RS21810 0.56 +0.1
222,317 + RR42_RS21810 0.56 +0.6
222,317 + RR42_RS21810 0.56 -1.0
222,317 + RR42_RS21810 0.56 +1.6
222,318 - RR42_RS21810 0.56 +1.3
222,327 - RR42_RS21810 0.57 -1.3
222,593 + RR42_RS21810 0.85 +1.0
222,594 - RR42_RS21810 0.85 +0.7
222,608 + RR42_RS21810 0.86 +1.6
222,608 + RR42_RS21810 0.86 +0.9
222,608 + RR42_RS21810 0.86 -0.8
222,609 - RR42_RS21810 0.87 +2.2
222,609 - RR42_RS21810 0.87 -0.7
222,696 - +0.8
222,728 + +0.8
222,728 + -2.1
222,783 - -0.4

Or see this region's nucleotide sequence