Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20540

Experiment: Octanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20535 and RR42_RS20540 are separated by 141 nucleotidesRR42_RS20540 and RR42_RS20545 are separated by 129 nucleotidesRR42_RS20545 and RR42_RS20550 are separated by 197 nucleotides RR42_RS20535: RR42_RS20535 - 3-phosphoglycerate dehydrogenase, at 4,450,992 to 4,452,005 _RS20535 RR42_RS20540: RR42_RS20540 - MFS transporter, at 4,452,147 to 4,453,322 _RS20540 RR42_RS20545: RR42_RS20545 - sulfurase, at 4,453,452 to 4,454,081 _RS20545 RR42_RS20550: RR42_RS20550 - hemolysin D, at 4,454,279 to 4,455,538 _RS20550 Position (kb) 4452 4453 4454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4451.148 kb on - strand, within RR42_RS20535at 4451.255 kb on + strand, within RR42_RS20535at 4451.256 kb on - strand, within RR42_RS20535at 4451.256 kb on - strand, within RR42_RS20535at 4451.358 kb on + strand, within RR42_RS20535at 4451.358 kb on + strand, within RR42_RS20535at 4451.359 kb on - strand, within RR42_RS20535at 4451.359 kb on - strand, within RR42_RS20535at 4451.858 kb on + strand, within RR42_RS20535at 4451.858 kb on + strand, within RR42_RS20535at 4451.859 kb on - strand, within RR42_RS20535at 4451.880 kb on + strand, within RR42_RS20535at 4451.881 kb on - strand, within RR42_RS20535at 4451.898 kb on + strand, within RR42_RS20535at 4451.898 kb on + strand, within RR42_RS20535at 4451.899 kb on - strand, within RR42_RS20535at 4451.907 kb on + strandat 4451.907 kb on + strandat 4451.907 kb on + strandat 4451.907 kb on + strandat 4451.907 kb on + strandat 4451.907 kb on + strandat 4451.908 kb on - strandat 4452.045 kb on + strandat 4452.046 kb on - strandat 4452.118 kb on + strandat 4452.119 kb on - strandat 4452.119 kb on - strandat 4452.328 kb on + strand, within RR42_RS20540at 4452.328 kb on + strand, within RR42_RS20540at 4452.328 kb on + strand, within RR42_RS20540at 4452.329 kb on - strand, within RR42_RS20540at 4452.329 kb on - strand, within RR42_RS20540at 4452.379 kb on - strand, within RR42_RS20540at 4452.379 kb on - strand, within RR42_RS20540at 4452.379 kb on - strand, within RR42_RS20540at 4452.693 kb on + strand, within RR42_RS20540at 4452.693 kb on + strand, within RR42_RS20540at 4452.693 kb on + strand, within RR42_RS20540at 4452.693 kb on + strand, within RR42_RS20540at 4452.694 kb on - strand, within RR42_RS20540at 4452.694 kb on - strand, within RR42_RS20540at 4452.694 kb on - strand, within RR42_RS20540at 4452.694 kb on - strand, within RR42_RS20540at 4452.694 kb on - strand, within RR42_RS20540at 4452.694 kb on - strand, within RR42_RS20540at 4452.803 kb on + strand, within RR42_RS20540at 4452.804 kb on - strand, within RR42_RS20540at 4452.804 kb on - strand, within RR42_RS20540at 4452.807 kb on + strand, within RR42_RS20540at 4452.807 kb on + strand, within RR42_RS20540at 4452.807 kb on + strand, within RR42_RS20540at 4452.807 kb on + strand, within RR42_RS20540at 4452.808 kb on - strand, within RR42_RS20540at 4452.808 kb on - strand, within RR42_RS20540at 4452.809 kb on + strand, within RR42_RS20540at 4452.809 kb on + strand, within RR42_RS20540at 4452.809 kb on + strand, within RR42_RS20540at 4452.809 kb on + strand, within RR42_RS20540at 4452.809 kb on + strand, within RR42_RS20540at 4452.809 kb on + strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4452.810 kb on - strand, within RR42_RS20540at 4453.146 kb on + strand, within RR42_RS20540at 4453.146 kb on + strand, within RR42_RS20540at 4453.146 kb on + strand, within RR42_RS20540at 4453.146 kb on + strand, within RR42_RS20540at 4453.147 kb on - strand, within RR42_RS20540at 4453.188 kb on + strand, within RR42_RS20540at 4453.188 kb on + strand, within RR42_RS20540at 4453.188 kb on + strand, within RR42_RS20540at 4453.189 kb on - strand, within RR42_RS20540at 4453.189 kb on - strand, within RR42_RS20540at 4453.189 kb on - strand, within RR42_RS20540at 4453.394 kb on + strandat 4453.394 kb on + strandat 4453.394 kb on + strandat 4453.395 kb on - strandat 4453.395 kb on - strandat 4453.460 kb on - strandat 4453.460 kb on - strandat 4453.460 kb on - strandat 4453.460 kb on - strandat 4453.460 kb on - strandat 4453.460 kb on - strandat 4453.674 kb on + strand, within RR42_RS20545at 4453.674 kb on + strand, within RR42_RS20545at 4453.674 kb on + strand, within RR42_RS20545at 4453.675 kb on - strand, within RR42_RS20545at 4453.675 kb on - strand, within RR42_RS20545at 4453.680 kb on + strand, within RR42_RS20545at 4453.695 kb on + strand, within RR42_RS20545at 4453.695 kb on + strand, within RR42_RS20545at 4453.695 kb on + strand, within RR42_RS20545at 4453.695 kb on + strand, within RR42_RS20545at 4453.696 kb on - strand, within RR42_RS20545at 4453.696 kb on - strand, within RR42_RS20545at 4453.696 kb on - strand, within RR42_RS20545at 4453.696 kb on - strand, within RR42_RS20545at 4453.878 kb on + strand, within RR42_RS20545at 4453.879 kb on - strand, within RR42_RS20545at 4453.922 kb on + strand, within RR42_RS20545at 4453.922 kb on + strand, within RR42_RS20545at 4453.922 kb on + strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.923 kb on - strand, within RR42_RS20545at 4453.950 kb on + strand, within RR42_RS20545at 4453.951 kb on - strand, within RR42_RS20545at 4454.083 kb on - strandat 4454.123 kb on + strandat 4454.126 kb on + strandat 4454.126 kb on + strandat 4454.126 kb on + strandat 4454.126 kb on + strandat 4454.126 kb on + strandat 4454.127 kb on - strandat 4454.127 kb on - strandat 4454.127 kb on - strandat 4454.127 kb on - strandat 4454.127 kb on - strandat 4454.133 kb on + strandat 4454.134 kb on - strandat 4454.181 kb on + strandat 4454.182 kb on - strandat 4454.184 kb on + strandat 4454.184 kb on + strandat 4454.184 kb on + strandat 4454.184 kb on + strandat 4454.184 kb on + strandat 4454.185 kb on - strandat 4454.185 kb on - strandat 4454.185 kb on - strandat 4454.185 kb on - strandat 4454.185 kb on - strandat 4454.187 kb on + strandat 4454.188 kb on - strandat 4454.264 kb on + strandat 4454.264 kb on + strandat 4454.265 kb on - strandat 4454.265 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
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4,451,148 - RR42_RS20535 0.15 -1.6
4,451,255 + RR42_RS20535 0.26 -1.4
4,451,256 - RR42_RS20535 0.26 -2.8
4,451,256 - RR42_RS20535 0.26 -2.1
4,451,358 + RR42_RS20535 0.36 -1.0
4,451,358 + RR42_RS20535 0.36 -1.6
4,451,359 - RR42_RS20535 0.36 -1.6
4,451,359 - RR42_RS20535 0.36 -2.4
4,451,858 + RR42_RS20535 0.85 -1.5
4,451,858 + RR42_RS20535 0.85 -2.1
4,451,859 - RR42_RS20535 0.86 -1.2
4,451,880 + RR42_RS20535 0.88 -0.6
4,451,881 - RR42_RS20535 0.88 +0.0
4,451,898 + RR42_RS20535 0.89 -2.6
4,451,898 + RR42_RS20535 0.89 +0.9
4,451,899 - RR42_RS20535 0.89 -1.4
4,451,907 + -1.4
4,451,907 + -1.8
4,451,907 + -1.3
4,451,907 + -1.8
4,451,907 + -1.0
4,451,907 + +0.5
4,451,908 - -1.7
4,452,045 + -0.0
4,452,046 - -2.2
4,452,118 + +1.1
4,452,119 - +0.2
4,452,119 - +1.9
4,452,328 + RR42_RS20540 0.15 -0.5
4,452,328 + RR42_RS20540 0.15 -2.6
4,452,328 + RR42_RS20540 0.15 +1.3
4,452,329 - RR42_RS20540 0.15 -0.1
4,452,329 - RR42_RS20540 0.15 -0.3
4,452,379 - RR42_RS20540 0.20 -0.3
4,452,379 - RR42_RS20540 0.20 -0.5
4,452,379 - RR42_RS20540 0.20 +0.6
4,452,693 + RR42_RS20540 0.46 +0.4
4,452,693 + RR42_RS20540 0.46 -2.5
4,452,693 + RR42_RS20540 0.46 -0.6
4,452,693 + RR42_RS20540 0.46 -0.2
4,452,694 - RR42_RS20540 0.47 -0.0
4,452,694 - RR42_RS20540 0.47 +0.6
4,452,694 - RR42_RS20540 0.47 -0.4
4,452,694 - RR42_RS20540 0.47 +0.2
4,452,694 - RR42_RS20540 0.47 +1.2
4,452,694 - RR42_RS20540 0.47 -0.3
4,452,803 + RR42_RS20540 0.56 -0.2
4,452,804 - RR42_RS20540 0.56 +0.3
4,452,804 - RR42_RS20540 0.56 -0.7
4,452,807 + RR42_RS20540 0.56 +0.4
4,452,807 + RR42_RS20540 0.56 -0.2
4,452,807 + RR42_RS20540 0.56 -0.3
4,452,807 + RR42_RS20540 0.56 -0.7
4,452,808 - RR42_RS20540 0.56 +0.7
4,452,808 - RR42_RS20540 0.56 -1.1
4,452,809 + RR42_RS20540 0.56 +1.6
4,452,809 + RR42_RS20540 0.56 +0.6
4,452,809 + RR42_RS20540 0.56 -0.3
4,452,809 + RR42_RS20540 0.56 -0.4
4,452,809 + RR42_RS20540 0.56 +0.6
4,452,809 + RR42_RS20540 0.56 +0.6
4,452,810 - RR42_RS20540 0.56 -0.4
4,452,810 - RR42_RS20540 0.56 -0.2
4,452,810 - RR42_RS20540 0.56 -0.7
4,452,810 - RR42_RS20540 0.56 -0.8
4,452,810 - RR42_RS20540 0.56 +1.2
4,452,810 - RR42_RS20540 0.56 -1.0
4,452,810 - RR42_RS20540 0.56 -1.2
4,452,810 - RR42_RS20540 0.56 -0.3
4,452,810 - RR42_RS20540 0.56 +1.6
4,452,810 - RR42_RS20540 0.56 +0.6
4,452,810 - RR42_RS20540 0.56 +0.6
4,453,146 + RR42_RS20540 0.85 -1.1
4,453,146 + RR42_RS20540 0.85 +0.4
4,453,146 + RR42_RS20540 0.85 -1.5
4,453,146 + RR42_RS20540 0.85 -0.2
4,453,147 - RR42_RS20540 0.85 -1.3
4,453,188 + RR42_RS20540 0.89 -1.1
4,453,188 + RR42_RS20540 0.89 +1.6
4,453,188 + RR42_RS20540 0.89 +0.4
4,453,189 - RR42_RS20540 0.89 +1.6
4,453,189 - RR42_RS20540 0.89 -0.5
4,453,189 - RR42_RS20540 0.89 +1.1
4,453,394 + +0.5
4,453,394 + -0.8
4,453,394 + +1.0
4,453,395 - -0.5
4,453,395 - -0.3
4,453,460 - +0.3
4,453,460 - +0.4
4,453,460 - +1.6
4,453,460 - +1.6
4,453,460 - -0.5
4,453,460 - -0.3
4,453,674 + RR42_RS20545 0.35 -1.4
4,453,674 + RR42_RS20545 0.35 -1.5
4,453,674 + RR42_RS20545 0.35 +0.2
4,453,675 - RR42_RS20545 0.35 -3.1
4,453,675 - RR42_RS20545 0.35 -0.5
4,453,680 + RR42_RS20545 0.36 -0.9
4,453,695 + RR42_RS20545 0.39 -1.6
4,453,695 + RR42_RS20545 0.39 -0.9
4,453,695 + RR42_RS20545 0.39 -0.8
4,453,695 + RR42_RS20545 0.39 -0.3
4,453,696 - RR42_RS20545 0.39 +0.1
4,453,696 - RR42_RS20545 0.39 +0.1
4,453,696 - RR42_RS20545 0.39 +2.0
4,453,696 - RR42_RS20545 0.39 +0.5
4,453,878 + RR42_RS20545 0.68 -1.2
4,453,879 - RR42_RS20545 0.68 +1.2
4,453,922 + RR42_RS20545 0.75 +0.7
4,453,922 + RR42_RS20545 0.75 +0.4
4,453,922 + RR42_RS20545 0.75 -1.0
4,453,923 - RR42_RS20545 0.75 -0.5
4,453,923 - RR42_RS20545 0.75 +0.3
4,453,923 - RR42_RS20545 0.75 +2.1
4,453,923 - RR42_RS20545 0.75 +0.6
4,453,923 - RR42_RS20545 0.75 -0.6
4,453,923 - RR42_RS20545 0.75 +0.1
4,453,923 - RR42_RS20545 0.75 +0.1
4,453,950 + RR42_RS20545 0.79 +0.0
4,453,951 - RR42_RS20545 0.79 -1.5
4,454,083 - -0.1
4,454,123 + -0.7
4,454,126 + +0.8
4,454,126 + +1.3
4,454,126 + +0.3
4,454,126 + -0.3
4,454,126 + +0.1
4,454,127 - +0.3
4,454,127 - -1.4
4,454,127 - -0.7
4,454,127 - -1.0
4,454,127 - -0.6
4,454,133 + -2.0
4,454,134 - -0.6
4,454,181 + +2.0
4,454,182 - -1.8
4,454,184 + -1.4
4,454,184 + -0.2
4,454,184 + -0.2
4,454,184 + -1.0
4,454,184 + +0.8
4,454,185 - +1.2
4,454,185 - +0.4
4,454,185 - +0.7
4,454,185 - +0.0
4,454,185 - +0.2
4,454,187 + -0.8
4,454,188 - -0.1
4,454,264 + -0.3
4,454,264 + -0.1
4,454,265 - +0.4
4,454,265 - -1.1

Or see this region's nucleotide sequence