Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19035 and RR42_RS19040 are separated by 356 nucleotides RR42_RS19040 and RR42_RS19045 are separated by 82 nucleotides RR42_RS19045 and RR42_RS19050 are separated by 420 nucleotides
RR42_RS19035: RR42_RS19035 - pilus assembly protein PilM, at 4,122,965 to 4,124,050
_RS19035
RR42_RS19040: RR42_RS19040 - penicillin-binding protein, at 4,124,407 to 4,126,779
_RS19040
RR42_RS19045: RR42_RS19045 - frataxin, at 4,126,862 to 4,127,197
_RS19045
RR42_RS19050: RR42_RS19050 - diaminopimelate decarboxylase, at 4,127,618 to 4,128,886
_RS19050
Position (kb) 4124
4125
4126
4127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4123.696 kb on - strand, within RR42_RS19035 at 4123.728 kb on + strand, within RR42_RS19035 at 4123.729 kb on - strand, within RR42_RS19035 at 4123.729 kb on - strand, within RR42_RS19035 at 4123.871 kb on - strand, within RR42_RS19035 at 4123.900 kb on + strand, within RR42_RS19035 at 4123.901 kb on - strand, within RR42_RS19035 at 4123.938 kb on + strand, within RR42_RS19035 at 4123.974 kb on - strand at 4123.974 kb on - strand at 4123.978 kb on + strand at 4123.979 kb on - strand at 4124.014 kb on + strand at 4124.014 kb on + strand at 4124.014 kb on + strand at 4124.109 kb on + strand at 4124.110 kb on - strand at 4124.110 kb on - strand at 4124.110 kb on - strand at 4124.141 kb on + strand at 4124.304 kb on + strand at 4124.305 kb on - strand at 4124.305 kb on - strand at 4124.305 kb on - strand at 4124.314 kb on - strand at 4124.314 kb on - strand at 4124.372 kb on + strand at 4124.372 kb on + strand at 4124.372 kb on + strand at 4124.372 kb on + strand at 4124.372 kb on + strand at 4124.372 kb on + strand at 4124.373 kb on - strand at 4124.373 kb on - strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.374 kb on + strand at 4124.389 kb on + strand at 4124.389 kb on + strand at 4124.389 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.393 kb on + strand at 4124.397 kb on + strand at 4124.397 kb on + strand at 4126.911 kb on - strand, within RR42_RS19045 at 4127.230 kb on + strand at 4127.240 kb on + strand at 4127.260 kb on + strand at 4127.260 kb on + strand at 4127.351 kb on + strand at 4127.351 kb on + strand at 4127.491 kb on + strand at 4127.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 4,123,696 - RR42_RS19035 0.67 +0.3 4,123,728 + RR42_RS19035 0.70 +0.4 4,123,729 - RR42_RS19035 0.70 +0.1 4,123,729 - RR42_RS19035 0.70 -0.1 4,123,871 - RR42_RS19035 0.83 +0.4 4,123,900 + RR42_RS19035 0.86 -1.4 4,123,901 - RR42_RS19035 0.86 -1.6 4,123,938 + RR42_RS19035 0.90 -0.1 4,123,974 - +1.1 4,123,974 - +0.8 4,123,978 + -2.1 4,123,979 - -0.9 4,124,014 + -1.6 4,124,014 + -1.0 4,124,014 + -0.0 4,124,109 + +0.9 4,124,110 - +0.2 4,124,110 - +0.6 4,124,110 - +1.8 4,124,141 + -0.3 4,124,304 + -1.7 4,124,305 - +1.3 4,124,305 - +0.6 4,124,305 - +0.6 4,124,314 - +1.8 4,124,314 - +0.8 4,124,372 + -2.0 4,124,372 + -3.6 4,124,372 + -2.6 4,124,372 + -1.2 4,124,372 + +1.6 4,124,372 + +0.8 4,124,373 - +2.6 4,124,373 - -1.6 4,124,374 + +0.0 4,124,374 + -0.3 4,124,374 + -1.1 4,124,374 + -0.3 4,124,374 + -1.7 4,124,374 + +0.1 4,124,374 + +1.6 4,124,374 + -1.1 4,124,374 + -1.6 4,124,389 + -0.2 4,124,389 + -2.0 4,124,389 + -1.8 4,124,393 + +1.0 4,124,393 + +0.6 4,124,393 + +1.3 4,124,393 + -0.7 4,124,393 + +0.0 4,124,393 + -0.6 4,124,393 + +0.5 4,124,393 + +0.1 4,124,393 + -0.3 4,124,393 + -0.0 4,124,393 + +0.6 4,124,397 + +0.3 4,124,397 + +1.0 4,126,911 - RR42_RS19045 0.15 +1.4 4,127,230 + -0.4 4,127,240 + +0.6 4,127,260 + +0.4 4,127,260 + -0.4 4,127,351 + +0.0 4,127,351 + +0.5 4,127,491 + +0.3 4,127,613 + +0.0
Or see this region's nucleotide sequence