Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04405 and RR42_RS04410 are separated by 20 nucleotides RR42_RS04410 and RR42_RS04415 are separated by 240 nucleotides
RR42_RS04405: RR42_RS04405 - cyanophycin synthetase, at 979,764 to 982,334
_RS04405
RR42_RS04410: RR42_RS04410 - cyanophycin synthetase, at 982,355 to 984,991
_RS04410
RR42_RS04415: RR42_RS04415 - ABC transporter, at 985,232 to 987,520
_RS04415
Position (kb) 982
983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 981.483 kb on - strand, within RR42_RS04405 at 981.485 kb on - strand, within RR42_RS04405 at 981.530 kb on - strand, within RR42_RS04405 at 981.838 kb on + strand, within RR42_RS04405 at 982.024 kb on + strand, within RR42_RS04405 at 982.024 kb on + strand, within RR42_RS04405 at 982.032 kb on + strand, within RR42_RS04405 at 982.032 kb on + strand, within RR42_RS04405 at 982.042 kb on + strand, within RR42_RS04405 at 982.042 kb on + strand, within RR42_RS04405 at 982.042 kb on + strand, within RR42_RS04405 at 982.043 kb on - strand, within RR42_RS04405 at 982.457 kb on + strand at 982.457 kb on + strand at 982.458 kb on - strand at 982.458 kb on - strand at 982.458 kb on - strand at 982.533 kb on + strand at 982.534 kb on - strand at 982.534 kb on - strand at 982.945 kb on - strand, within RR42_RS04410 at 983.025 kb on + strand, within RR42_RS04410 at 983.026 kb on - strand, within RR42_RS04410 at 983.026 kb on - strand, within RR42_RS04410 at 983.205 kb on + strand, within RR42_RS04410 at 983.205 kb on + strand, within RR42_RS04410 at 983.206 kb on - strand, within RR42_RS04410 at 983.206 kb on - strand, within RR42_RS04410 at 983.206 kb on - strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.229 kb on + strand, within RR42_RS04410 at 983.230 kb on - strand, within RR42_RS04410 at 983.230 kb on - strand, within RR42_RS04410 at 983.232 kb on + strand, within RR42_RS04410 at 983.292 kb on + strand, within RR42_RS04410 at 983.428 kb on - strand, within RR42_RS04410 at 984.050 kb on + strand, within RR42_RS04410 at 984.050 kb on + strand, within RR42_RS04410 at 984.207 kb on + strand, within RR42_RS04410 at 984.411 kb on + strand, within RR42_RS04410 at 984.411 kb on + strand, within RR42_RS04410 at 984.411 kb on + strand, within RR42_RS04410 at 984.559 kb on - strand, within RR42_RS04410 at 984.654 kb on + strand, within RR42_RS04410 at 984.654 kb on + strand, within RR42_RS04410 at 984.853 kb on - strand at 984.927 kb on + strand at 984.928 kb on - strand at 984.997 kb on + strand at 984.998 kb on - strand at 985.030 kb on - strand at 985.030 kb on - strand at 985.030 kb on - strand at 985.038 kb on - strand at 985.048 kb on + strand at 985.049 kb on - strand at 985.049 kb on - strand at 985.054 kb on + strand at 985.131 kb on + strand at 985.131 kb on + strand at 985.132 kb on - strand at 985.132 kb on - strand at 985.136 kb on - strand at 985.136 kb on - strand at 985.194 kb on - strand at 985.194 kb on - strand at 985.201 kb on + strand at 985.202 kb on - strand at 985.232 kb on - strand at 985.383 kb on + strand at 985.543 kb on + strand, within RR42_RS04415 at 985.544 kb on - strand, within RR42_RS04415 at 985.554 kb on - strand, within RR42_RS04415 at 985.908 kb on - strand, within RR42_RS04415 at 985.985 kb on + strand, within RR42_RS04415 at 985.986 kb on - strand, within RR42_RS04415 at 985.986 kb on - strand, within RR42_RS04415 at 985.986 kb on - strand, within RR42_RS04415
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 981,483 - RR42_RS04405 0.67 +0.6 981,485 - RR42_RS04405 0.67 -0.5 981,530 - RR42_RS04405 0.69 +1.7 981,838 + RR42_RS04405 0.81 +1.9 982,024 + RR42_RS04405 0.88 +2.0 982,024 + RR42_RS04405 0.88 +0.2 982,032 + RR42_RS04405 0.88 +2.3 982,032 + RR42_RS04405 0.88 -0.7 982,042 + RR42_RS04405 0.89 +1.7 982,042 + RR42_RS04405 0.89 +1.3 982,042 + RR42_RS04405 0.89 +0.7 982,043 - RR42_RS04405 0.89 +1.3 982,457 + +0.1 982,457 + +0.3 982,458 - -1.7 982,458 - +0.4 982,458 - +2.0 982,533 + -0.3 982,534 - +3.7 982,534 - +1.3 982,945 - RR42_RS04410 0.22 -0.9 983,025 + RR42_RS04410 0.25 +1.3 983,026 - RR42_RS04410 0.25 -0.0 983,026 - RR42_RS04410 0.25 -1.7 983,205 + RR42_RS04410 0.32 +1.0 983,205 + RR42_RS04410 0.32 +0.7 983,206 - RR42_RS04410 0.32 +1.7 983,206 - RR42_RS04410 0.32 -1.5 983,206 - RR42_RS04410 0.32 +0.6 983,229 + RR42_RS04410 0.33 +1.0 983,229 + RR42_RS04410 0.33 +1.0 983,229 + RR42_RS04410 0.33 +1.3 983,229 + RR42_RS04410 0.33 +0.6 983,229 + RR42_RS04410 0.33 -1.5 983,229 + RR42_RS04410 0.33 +0.7 983,229 + RR42_RS04410 0.33 +1.4 983,230 - RR42_RS04410 0.33 +1.0 983,230 - RR42_RS04410 0.33 +0.3 983,232 + RR42_RS04410 0.33 -0.3 983,292 + RR42_RS04410 0.36 +1.1 983,428 - RR42_RS04410 0.41 -0.2 984,050 + RR42_RS04410 0.64 +1.0 984,050 + RR42_RS04410 0.64 +1.3 984,207 + RR42_RS04410 0.70 +2.0 984,411 + RR42_RS04410 0.78 +1.3 984,411 + RR42_RS04410 0.78 -0.0 984,411 + RR42_RS04410 0.78 -0.3 984,559 - RR42_RS04410 0.84 +3.1 984,654 + RR42_RS04410 0.87 +1.6 984,654 + RR42_RS04410 0.87 +1.1 984,853 - +0.9 984,927 + +0.3 984,928 - -0.7 984,997 + +1.3 984,998 - -1.6 985,030 - -0.0 985,030 - -0.5 985,030 - -1.5 985,038 - -0.4 985,048 + -0.4 985,049 - -0.0 985,049 - +0.1 985,054 + +1.3 985,131 + +1.9 985,131 + -2.4 985,132 - +4.1 985,132 - +0.6 985,136 - -1.3 985,136 - -0.9 985,194 - +1.7 985,194 - +1.8 985,201 + +0.9 985,202 - +1.6 985,232 - +1.4 985,383 + -2.2 985,543 + RR42_RS04415 0.14 +0.8 985,544 - RR42_RS04415 0.14 +0.5 985,554 - RR42_RS04415 0.14 +0.9 985,908 - RR42_RS04415 0.30 +0.3 985,985 + RR42_RS04415 0.33 +0.3 985,986 - RR42_RS04415 0.33 +1.3 985,986 - RR42_RS04415 0.33 +0.3 985,986 - RR42_RS04415 0.33 +1.4
Or see this region's nucleotide sequence