Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02535 and RR42_RS02540 are separated by 296 nucleotides RR42_RS02540 and RR42_RS02545 overlap by 4 nucleotides RR42_RS02545 and RR42_RS02550 are separated by 23 nucleotides
RR42_RS02535: RR42_RS02535 - metal ABC transporter permease, at 570,092 to 571,987
_RS02535
RR42_RS02540: RR42_RS02540 - taurine ABC transporter permease, at 572,284 to 573,306
_RS02540
RR42_RS02545: RR42_RS02545 - nitrate ABC transporter ATP-binding protein, at 573,303 to 574,166
_RS02545
RR42_RS02550: RR42_RS02550 - ABC transporter permease, at 574,190 to 574,954
_RS02550
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1 at 571.346 kb on + strand, within RR42_RS02535 at 571.346 kb on + strand, within RR42_RS02535 at 571.346 kb on + strand, within RR42_RS02535 at 571.469 kb on + strand, within RR42_RS02535 at 571.469 kb on + strand, within RR42_RS02535 at 571.469 kb on + strand, within RR42_RS02535 at 571.473 kb on - strand, within RR42_RS02535 at 571.473 kb on - strand, within RR42_RS02535 at 571.574 kb on + strand, within RR42_RS02535 at 572.079 kb on + strand at 572.079 kb on + strand at 572.080 kb on - strand at 572.080 kb on - strand at 572.089 kb on - strand at 572.157 kb on - strand at 572.157 kb on - strand at 572.157 kb on - strand at 572.181 kb on - strand at 572.434 kb on + strand, within RR42_RS02540 at 572.435 kb on - strand, within RR42_RS02540 at 572.609 kb on - strand, within RR42_RS02540 at 572.917 kb on + strand, within RR42_RS02540 at 573.268 kb on + strand at 573.269 kb on - strand at 573.269 kb on - strand at 573.733 kb on - strand, within RR42_RS02545 at 573.733 kb on - strand, within RR42_RS02545 at 573.792 kb on + strand, within RR42_RS02545 at 573.793 kb on - strand, within RR42_RS02545 at 574.101 kb on - strand at 574.101 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 571,346 + RR42_RS02535 0.66 +1.5 571,346 + RR42_RS02535 0.66 -0.2 571,346 + RR42_RS02535 0.66 +0.5 571,469 + RR42_RS02535 0.73 +0.6 571,469 + RR42_RS02535 0.73 +1.7 571,469 + RR42_RS02535 0.73 -0.5 571,473 - RR42_RS02535 0.73 -1.5 571,473 - RR42_RS02535 0.73 +1.0 571,574 + RR42_RS02535 0.78 -1.2 572,079 + -0.5 572,079 + -0.5 572,080 - -0.7 572,080 - +1.0 572,089 - -0.4 572,157 - +1.0 572,157 - +0.1 572,157 - -0.2 572,181 - -0.4 572,434 + RR42_RS02540 0.15 -1.5 572,435 - RR42_RS02540 0.15 -1.8 572,609 - RR42_RS02540 0.32 -0.4 572,917 + RR42_RS02540 0.62 -0.4 573,268 + +0.1 573,269 - +0.7 573,269 - +0.5 573,733 - RR42_RS02545 0.50 +0.7 573,733 - RR42_RS02545 0.50 -1.5 573,792 + RR42_RS02545 0.57 -0.5 573,793 - RR42_RS02545 0.57 +1.1 574,101 - +0.5 574,101 - +0.2
Or see this region's nucleotide sequence