Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01600 and RR42_RS01605 are separated by 111 nucleotides RR42_RS01605 and RR42_RS01610 are separated by 72 nucleotides RR42_RS01610 and RR42_RS01615 are separated by 461 nucleotides
RR42_RS01600: RR42_RS01600 - methylmalonyl-CoA mutase, at 362,224 to 365,532
_RS01600
RR42_RS01605: RR42_RS01605 - hydrolase, at 365,644 to 366,078
_RS01605
RR42_RS01610: RR42_RS01610 - 3-hydroxybutyryl-CoA dehydrogenase, at 366,151 to 367,005
_RS01610
RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011
_RS01615
Position (kb) 366
367
368 Strain fitness (log2 ratio) -1
0
1
2 at 365.209 kb on + strand at 365.213 kb on - strand at 365.213 kb on - strand at 365.259 kb on + strand at 365.259 kb on + strand at 365.260 kb on - strand at 365.505 kb on - strand at 365.526 kb on + strand at 365.527 kb on - strand at 365.572 kb on + strand at 365.653 kb on - strand at 365.674 kb on - strand at 365.674 kb on - strand at 365.717 kb on + strand, within RR42_RS01605 at 365.717 kb on + strand, within RR42_RS01605 at 365.718 kb on - strand, within RR42_RS01605 at 365.718 kb on - strand, within RR42_RS01605 at 365.720 kb on - strand, within RR42_RS01605 at 365.777 kb on + strand, within RR42_RS01605 at 365.778 kb on - strand, within RR42_RS01605 at 366.237 kb on - strand, within RR42_RS01610 at 366.237 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.380 kb on - strand, within RR42_RS01610 at 366.758 kb on + strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.989 kb on - strand at 366.989 kb on - strand at 366.994 kb on + strand at 366.994 kb on + strand at 366.995 kb on - strand at 367.158 kb on + strand at 367.158 kb on + strand at 367.181 kb on - strand at 367.235 kb on - strand at 367.235 kb on - strand at 367.238 kb on - strand at 367.320 kb on + strand at 367.321 kb on - strand at 367.392 kb on - strand at 367.466 kb on + strand at 367.501 kb on - strand at 367.629 kb on - strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.798 kb on - strand, within RR42_RS01615 at 367.854 kb on + strand, within RR42_RS01615 at 367.874 kb on + strand, within RR42_RS01615
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 365,209 + -0.1 365,213 - -0.8 365,213 - +0.1 365,259 + +1.6 365,259 + -1.2 365,260 - +0.4 365,505 - +1.0 365,526 + -0.6 365,527 - +0.6 365,572 + +0.1 365,653 - -1.0 365,674 - +0.1 365,674 - -0.4 365,717 + RR42_RS01605 0.17 +0.9 365,717 + RR42_RS01605 0.17 -0.6 365,718 - RR42_RS01605 0.17 +0.6 365,718 - RR42_RS01605 0.17 -0.1 365,720 - RR42_RS01605 0.17 +0.8 365,777 + RR42_RS01605 0.31 +0.3 365,778 - RR42_RS01605 0.31 -0.4 366,237 - RR42_RS01610 0.10 +1.6 366,237 - RR42_RS01610 0.10 +0.4 366,380 - RR42_RS01610 0.27 -0.7 366,380 - RR42_RS01610 0.27 +1.1 366,380 - RR42_RS01610 0.27 -0.9 366,380 - RR42_RS01610 0.27 -0.2 366,758 + RR42_RS01610 0.71 -0.3 366,893 - RR42_RS01610 0.87 -0.0 366,893 - RR42_RS01610 0.87 -0.3 366,989 - +0.6 366,989 - -0.1 366,994 + -0.1 366,994 + -0.8 366,995 - -0.1 367,158 + -0.0 367,158 + -0.7 367,181 - +1.2 367,235 - -0.2 367,235 - +0.3 367,238 - -0.7 367,320 + -0.2 367,321 - -0.1 367,392 - +1.3 367,466 + +0.5 367,501 - -1.2 367,629 - RR42_RS01615 0.10 -0.5 367,797 + RR42_RS01615 0.21 +1.4 367,797 + RR42_RS01615 0.21 -0.0 367,797 + RR42_RS01615 0.21 +0.5 367,798 - RR42_RS01615 0.21 +1.9 367,854 + RR42_RS01615 0.25 +0.3 367,874 + RR42_RS01615 0.26 +0.9
Or see this region's nucleotide sequence