Experiment: Octanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01290 and RR42_RS01295 are separated by 141 nucleotides RR42_RS01295 and RR42_RS01300 are separated by 12 nucleotides RR42_RS01300 and RR42_RS01305 are separated by 6 nucleotides
RR42_RS01290: RR42_RS01290 - thiamine biosynthesis protein ThiC, at 293,872 to 295,758
_RS01290
RR42_RS01295: RR42_RS01295 - cytochrome C biogenesis protein CcdA, at 295,900 to 297,078
_RS01295
RR42_RS01300: RR42_RS01300 - thiamine biosynthesis protein ThiS, at 297,091 to 297,288
_RS01300
RR42_RS01305: RR42_RS01305 - thiazole synthase, at 297,295 to 298,143
_RS01305
Position (kb) 295
296
297
298 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 295.209 kb on + strand, within RR42_RS01290 at 295.234 kb on + strand, within RR42_RS01290 at 295.234 kb on + strand, within RR42_RS01290 at 295.564 kb on + strand, within RR42_RS01290 at 295.750 kb on + strand at 295.750 kb on + strand at 295.756 kb on + strand at 295.763 kb on + strand at 295.808 kb on + strand at 295.844 kb on + strand at 295.844 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Octanoic (C) remove 295,209 + RR42_RS01290 0.71 -2.0 295,234 + RR42_RS01290 0.72 -3.9 295,234 + RR42_RS01290 0.72 -2.6 295,564 + RR42_RS01290 0.90 -3.5 295,750 + +1.6 295,750 + +0.1 295,756 + -0.0 295,763 + -0.6 295,808 + +0.2 295,844 + -1.9 295,844 + +0.2
Or see this region's nucleotide sequence