Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01015

Experiment: Octanoic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01005 and RR42_RS01010 are separated by 291 nucleotidesRR42_RS01010 and RR42_RS01015 are separated by 65 nucleotidesRR42_RS01015 and RR42_RS01020 are separated by 168 nucleotidesRR42_RS01020 and RR42_RS01025 overlap by 11 nucleotides RR42_RS01005: RR42_RS01005 - ABC transporter substrate-binding protein, at 237,428 to 239,014 _RS01005 RR42_RS01010: RR42_RS01010 - glutathione S-transferase, at 239,306 to 239,929 _RS01010 RR42_RS01015: RR42_RS01015 - TonB-dependent receptor, at 239,995 to 242,145 _RS01015 RR42_RS01020: RR42_RS01020 - hypothetical protein, at 242,314 to 242,781 _RS01020 RR42_RS01025: RR42_RS01025 - GTPase, at 242,771 to 244,066 _RS01025 Position (kb) 239 240 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 239.030 kb on - strandat 239.211 kb on + strandat 239.261 kb on + strandat 239.261 kb on + strandat 239.263 kb on + strandat 239.719 kb on + strand, within RR42_RS01010at 239.720 kb on - strand, within RR42_RS01010at 239.720 kb on - strand, within RR42_RS01010at 239.759 kb on + strand, within RR42_RS01010at 239.759 kb on + strand, within RR42_RS01010at 239.760 kb on - strand, within RR42_RS01010at 239.822 kb on + strand, within RR42_RS01010at 239.822 kb on + strand, within RR42_RS01010at 239.823 kb on - strand, within RR42_RS01010at 239.823 kb on - strand, within RR42_RS01010at 239.823 kb on - strand, within RR42_RS01010at 239.850 kb on - strand, within RR42_RS01010at 239.868 kb on - strandat 240.110 kb on + strandat 240.146 kb on + strandat 240.147 kb on - strandat 240.147 kb on - strandat 240.173 kb on + strandat 240.173 kb on + strandat 240.173 kb on + strandat 240.173 kb on + strandat 240.173 kb on + strandat 240.173 kb on + strandat 240.174 kb on - strandat 240.174 kb on - strandat 240.263 kb on + strand, within RR42_RS01015at 240.342 kb on - strand, within RR42_RS01015at 240.428 kb on + strand, within RR42_RS01015at 240.452 kb on + strand, within RR42_RS01015at 240.452 kb on + strand, within RR42_RS01015at 240.452 kb on + strand, within RR42_RS01015at 240.452 kb on + strand, within RR42_RS01015at 240.452 kb on + strand, within RR42_RS01015at 240.453 kb on - strand, within RR42_RS01015at 240.453 kb on - strand, within RR42_RS01015at 240.453 kb on - strand, within RR42_RS01015at 240.543 kb on - strand, within RR42_RS01015at 240.560 kb on + strand, within RR42_RS01015at 240.560 kb on + strand, within RR42_RS01015at 240.560 kb on + strand, within RR42_RS01015at 240.695 kb on + strand, within RR42_RS01015at 240.696 kb on - strand, within RR42_RS01015at 240.704 kb on + strand, within RR42_RS01015at 240.704 kb on + strand, within RR42_RS01015at 240.704 kb on + strand, within RR42_RS01015at 240.705 kb on - strand, within RR42_RS01015at 240.728 kb on + strand, within RR42_RS01015at 240.729 kb on - strand, within RR42_RS01015at 240.770 kb on + strand, within RR42_RS01015at 240.770 kb on + strand, within RR42_RS01015at 241.032 kb on + strand, within RR42_RS01015at 241.033 kb on - strand, within RR42_RS01015at 241.130 kb on + strand, within RR42_RS01015at 241.130 kb on + strand, within RR42_RS01015at 241.131 kb on - strand, within RR42_RS01015at 241.139 kb on + strand, within RR42_RS01015at 241.140 kb on - strand, within RR42_RS01015at 241.289 kb on + strand, within RR42_RS01015at 241.289 kb on + strand, within RR42_RS01015at 241.290 kb on - strand, within RR42_RS01015at 241.290 kb on - strand, within RR42_RS01015at 241.322 kb on + strand, within RR42_RS01015at 241.322 kb on + strand, within RR42_RS01015at 241.322 kb on + strand, within RR42_RS01015at 241.322 kb on + strand, within RR42_RS01015at 241.440 kb on - strand, within RR42_RS01015at 241.656 kb on - strand, within RR42_RS01015at 241.836 kb on - strand, within RR42_RS01015at 242.883 kb on + strandat 242.884 kb on - strandat 243.040 kb on + strand, within RR42_RS01025at 243.040 kb on + strand, within RR42_RS01025at 243.041 kb on - strand, within RR42_RS01025at 243.134 kb on + strand, within RR42_RS01025

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Octanoic (C)
remove
239,030 - -1.2
239,211 + -0.4
239,261 + -0.8
239,261 + -1.0
239,263 + +0.4
239,719 + RR42_RS01010 0.66 -0.9
239,720 - RR42_RS01010 0.66 -1.1
239,720 - RR42_RS01010 0.66 -0.3
239,759 + RR42_RS01010 0.73 -0.0
239,759 + RR42_RS01010 0.73 +0.6
239,760 - RR42_RS01010 0.73 -0.5
239,822 + RR42_RS01010 0.83 -0.3
239,822 + RR42_RS01010 0.83 -0.3
239,823 - RR42_RS01010 0.83 +0.6
239,823 - RR42_RS01010 0.83 -1.2
239,823 - RR42_RS01010 0.83 +0.5
239,850 - RR42_RS01010 0.87 +1.6
239,868 - -1.9
240,110 + +0.0
240,146 + -1.2
240,147 - -2.0
240,147 - -0.7
240,173 + +1.6
240,173 + +2.6
240,173 + -0.4
240,173 + -1.8
240,173 + -0.8
240,173 + -0.8
240,174 - +0.1
240,174 - -1.4
240,263 + RR42_RS01015 0.12 +2.0
240,342 - RR42_RS01015 0.16 +0.6
240,428 + RR42_RS01015 0.20 -0.5
240,452 + RR42_RS01015 0.21 -2.8
240,452 + RR42_RS01015 0.21 +1.3
240,452 + RR42_RS01015 0.21 +0.8
240,452 + RR42_RS01015 0.21 +0.9
240,452 + RR42_RS01015 0.21 -0.1
240,453 - RR42_RS01015 0.21 -0.1
240,453 - RR42_RS01015 0.21 +0.6
240,453 - RR42_RS01015 0.21 -0.8
240,543 - RR42_RS01015 0.25 -1.5
240,560 + RR42_RS01015 0.26 -0.8
240,560 + RR42_RS01015 0.26 -1.2
240,560 + RR42_RS01015 0.26 -0.9
240,695 + RR42_RS01015 0.33 -0.3
240,696 - RR42_RS01015 0.33 -1.0
240,704 + RR42_RS01015 0.33 -0.4
240,704 + RR42_RS01015 0.33 -2.2
240,704 + RR42_RS01015 0.33 -0.8
240,705 - RR42_RS01015 0.33 -1.0
240,728 + RR42_RS01015 0.34 +0.1
240,729 - RR42_RS01015 0.34 -2.5
240,770 + RR42_RS01015 0.36 -0.8
240,770 + RR42_RS01015 0.36 -0.3
241,032 + RR42_RS01015 0.48 -1.3
241,033 - RR42_RS01015 0.48 -0.4
241,130 + RR42_RS01015 0.53 -0.1
241,130 + RR42_RS01015 0.53 +0.3
241,131 - RR42_RS01015 0.53 -1.9
241,139 + RR42_RS01015 0.53 +0.0
241,140 - RR42_RS01015 0.53 -1.1
241,289 + RR42_RS01015 0.60 +0.1
241,289 + RR42_RS01015 0.60 -1.9
241,290 - RR42_RS01015 0.60 -0.9
241,290 - RR42_RS01015 0.60 +0.4
241,322 + RR42_RS01015 0.62 -2.1
241,322 + RR42_RS01015 0.62 +2.9
241,322 + RR42_RS01015 0.62 -1.6
241,322 + RR42_RS01015 0.62 +1.0
241,440 - RR42_RS01015 0.67 -0.5
241,656 - RR42_RS01015 0.77 -0.1
241,836 - RR42_RS01015 0.86 -0.4
242,883 + -0.0
242,884 - -0.0
243,040 + RR42_RS01025 0.21 -1.3
243,040 + RR42_RS01025 0.21 -0.1
243,041 - RR42_RS01025 0.21 -0.8
243,134 + RR42_RS01025 0.28 +0.6

Or see this region's nucleotide sequence