Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4398

Experiment: Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4397 and BT4398 are separated by 21 nucleotidesBT4398 and BT4399 are separated by 72 nucleotides BT4397: BT4397 - xylose/H+ symporter (NCBI ptt file), at 5,791,343 to 5,792,725 BT4397 BT4398: BT4398 - TPR-domain containing protein (NCBI ptt file), at 5,792,747 to 5,796,028 BT4398 BT4399: BT4399 - conserved hypothetical protein (NCBI ptt file), at 5,796,101 to 5,797,252 BT4399 Position (kb) 5792 5793 5794 5795 5796 5797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5791.846 kb on + strand, within BT4397at 5792.011 kb on - strand, within BT4397at 5792.125 kb on + strand, within BT4397at 5792.130 kb on + strand, within BT4397at 5792.209 kb on - strand, within BT4397at 5792.285 kb on - strand, within BT4397at 5792.297 kb on - strand, within BT4397at 5792.367 kb on - strand, within BT4397at 5792.494 kb on - strand, within BT4397at 5792.566 kb on + strand, within BT4397at 5792.743 kb on + strandat 5792.786 kb on + strandat 5792.786 kb on + strandat 5792.815 kb on + strandat 5792.857 kb on - strandat 5792.901 kb on + strandat 5792.920 kb on + strandat 5792.921 kb on - strandat 5792.968 kb on - strandat 5792.991 kb on - strandat 5792.995 kb on + strandat 5793.016 kb on + strandat 5793.017 kb on - strandat 5793.037 kb on + strandat 5793.092 kb on - strand, within BT4398at 5793.123 kb on - strand, within BT4398at 5793.124 kb on + strand, within BT4398at 5793.124 kb on + strand, within BT4398at 5793.132 kb on + strand, within BT4398at 5793.175 kb on - strand, within BT4398at 5793.175 kb on - strand, within BT4398at 5793.259 kb on - strand, within BT4398at 5793.272 kb on + strand, within BT4398at 5793.338 kb on + strand, within BT4398at 5793.342 kb on - strand, within BT4398at 5793.342 kb on - strand, within BT4398at 5793.352 kb on - strand, within BT4398at 5793.444 kb on - strand, within BT4398at 5793.472 kb on + strand, within BT4398at 5793.473 kb on - strand, within BT4398at 5793.490 kb on + strand, within BT4398at 5793.497 kb on + strand, within BT4398at 5793.497 kb on + strand, within BT4398at 5793.500 kb on - strand, within BT4398at 5793.536 kb on + strand, within BT4398at 5793.671 kb on + strand, within BT4398at 5793.671 kb on + strand, within BT4398at 5793.671 kb on + strand, within BT4398at 5793.718 kb on + strand, within BT4398at 5793.734 kb on + strand, within BT4398at 5793.758 kb on + strand, within BT4398at 5793.759 kb on - strand, within BT4398at 5793.872 kb on - strand, within BT4398at 5793.917 kb on + strand, within BT4398at 5793.918 kb on - strand, within BT4398at 5793.975 kb on + strand, within BT4398at 5793.975 kb on + strand, within BT4398at 5794.172 kb on + strand, within BT4398at 5794.187 kb on + strand, within BT4398at 5794.187 kb on + strand, within BT4398at 5794.224 kb on + strand, within BT4398at 5794.224 kb on + strand, within BT4398at 5794.229 kb on - strand, within BT4398at 5794.229 kb on - strand, within BT4398at 5794.254 kb on - strand, within BT4398at 5794.290 kb on - strand, within BT4398at 5794.352 kb on - strand, within BT4398at 5794.352 kb on - strand, within BT4398at 5794.352 kb on - strand, within BT4398at 5794.355 kb on + strand, within BT4398at 5794.355 kb on + strand, within BT4398at 5794.356 kb on - strand, within BT4398at 5794.356 kb on - strand, within BT4398at 5794.543 kb on + strand, within BT4398at 5794.634 kb on - strand, within BT4398at 5794.639 kb on + strand, within BT4398at 5794.708 kb on - strand, within BT4398at 5794.740 kb on - strand, within BT4398at 5794.761 kb on - strand, within BT4398at 5794.807 kb on - strand, within BT4398at 5794.807 kb on - strand, within BT4398at 5794.807 kb on - strand, within BT4398at 5794.842 kb on - strand, within BT4398at 5794.842 kb on - strand, within BT4398at 5794.848 kb on - strand, within BT4398at 5794.975 kb on + strand, within BT4398at 5794.976 kb on - strand, within BT4398at 5795.013 kb on - strand, within BT4398at 5795.031 kb on - strand, within BT4398at 5795.046 kb on - strand, within BT4398at 5795.114 kb on - strand, within BT4398at 5795.389 kb on + strand, within BT4398at 5795.436 kb on - strand, within BT4398at 5795.487 kb on - strand, within BT4398at 5795.548 kb on + strand, within BT4398at 5795.549 kb on - strand, within BT4398at 5795.600 kb on + strand, within BT4398at 5795.600 kb on + strand, within BT4398at 5795.688 kb on - strand, within BT4398at 5795.776 kb on + strandat 5795.819 kb on - strandat 5795.828 kb on + strandat 5796.089 kb on - strandat 5796.152 kb on + strandat 5796.205 kb on + strandat 5796.350 kb on + strand, within BT4399at 5796.397 kb on + strand, within BT4399at 5796.437 kb on - strand, within BT4399at 5796.467 kb on - strand, within BT4399at 5796.511 kb on - strand, within BT4399at 5796.511 kb on - strand, within BT4399at 5796.516 kb on + strand, within BT4399at 5796.566 kb on + strand, within BT4399at 5796.566 kb on + strand, within BT4399at 5796.651 kb on - strand, within BT4399at 5796.838 kb on - strand, within BT4399at 5796.856 kb on + strand, within BT4399at 5796.856 kb on + strand, within BT4399at 5796.876 kb on + strand, within BT4399at 5796.876 kb on + strand, within BT4399at 5796.877 kb on - strand, within BT4399at 5796.877 kb on - strand, within BT4399

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Phenazine ethosulfate 0.2 mM
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5,791,846 + BT4397 0.36 -0.1
5,792,011 - BT4397 0.48 -3.5
5,792,125 + BT4397 0.57 +0.9
5,792,130 + BT4397 0.57 -0.1
5,792,209 - BT4397 0.63 +1.9
5,792,285 - BT4397 0.68 +0.2
5,792,297 - BT4397 0.69 -0.8
5,792,367 - BT4397 0.74 -1.7
5,792,494 - BT4397 0.83 -0.7
5,792,566 + BT4397 0.88 -1.9
5,792,743 + -0.5
5,792,786 + -1.5
5,792,786 + +0.5
5,792,815 + -2.1
5,792,857 - -1.6
5,792,901 + -0.1
5,792,920 + -2.7
5,792,921 - -2.8
5,792,968 - -2.4
5,792,991 - -2.4
5,792,995 + -1.1
5,793,016 + -1.1
5,793,017 - -2.1
5,793,037 + +0.3
5,793,092 - BT4398 0.11 -3.8
5,793,123 - BT4398 0.11 -2.1
5,793,124 + BT4398 0.11 -3.1
5,793,124 + BT4398 0.11 -1.7
5,793,132 + BT4398 0.12 -2.1
5,793,175 - BT4398 0.13 +0.2
5,793,175 - BT4398 0.13 -2.8
5,793,259 - BT4398 0.16 -1.7
5,793,272 + BT4398 0.16 -2.4
5,793,338 + BT4398 0.18 -0.1
5,793,342 - BT4398 0.18 -1.9
5,793,342 - BT4398 0.18 -1.5
5,793,352 - BT4398 0.18 -0.1
5,793,444 - BT4398 0.21 -2.4
5,793,472 + BT4398 0.22 -0.1
5,793,473 - BT4398 0.22 -0.3
5,793,490 + BT4398 0.23 +1.1
5,793,497 + BT4398 0.23 -1.1
5,793,497 + BT4398 0.23 +2.2
5,793,500 - BT4398 0.23 -2.1
5,793,536 + BT4398 0.24 -0.1
5,793,671 + BT4398 0.28 -1.1
5,793,671 + BT4398 0.28 -0.1
5,793,671 + BT4398 0.28 -2.0
5,793,718 + BT4398 0.30 -2.1
5,793,734 + BT4398 0.30 +0.5
5,793,758 + BT4398 0.31 -0.1
5,793,759 - BT4398 0.31 -1.4
5,793,872 - BT4398 0.34 -0.8
5,793,917 + BT4398 0.36 -1.7
5,793,918 - BT4398 0.36 -2.4
5,793,975 + BT4398 0.37 -2.1
5,793,975 + BT4398 0.37 -0.3
5,794,172 + BT4398 0.43 -1.1
5,794,187 + BT4398 0.44 -3.3
5,794,187 + BT4398 0.44 -1.8
5,794,224 + BT4398 0.45 -2.9
5,794,224 + BT4398 0.45 -0.9
5,794,229 - BT4398 0.45 -0.1
5,794,229 - BT4398 0.45 -0.1
5,794,254 - BT4398 0.46 -1.1
5,794,290 - BT4398 0.47 -3.1
5,794,352 - BT4398 0.49 -2.1
5,794,352 - BT4398 0.49 -2.5
5,794,352 - BT4398 0.49 -3.8
5,794,355 + BT4398 0.49 -1.7
5,794,355 + BT4398 0.49 -1.3
5,794,356 - BT4398 0.49 -1.1
5,794,356 - BT4398 0.49 -1.1
5,794,543 + BT4398 0.55 +0.2
5,794,634 - BT4398 0.57 -1.1
5,794,639 + BT4398 0.58 +0.6
5,794,708 - BT4398 0.60 -2.7
5,794,740 - BT4398 0.61 -2.9
5,794,761 - BT4398 0.61 -1.4
5,794,807 - BT4398 0.63 +0.9
5,794,807 - BT4398 0.63 -3.2
5,794,807 - BT4398 0.63 -1.7
5,794,842 - BT4398 0.64 -1.2
5,794,842 - BT4398 0.64 -1.0
5,794,848 - BT4398 0.64 -2.1
5,794,975 + BT4398 0.68 -1.1
5,794,976 - BT4398 0.68 -1.9
5,795,013 - BT4398 0.69 -1.0
5,795,031 - BT4398 0.70 -1.7
5,795,046 - BT4398 0.70 -0.1
5,795,114 - BT4398 0.72 -1.7
5,795,389 + BT4398 0.80 -0.1
5,795,436 - BT4398 0.82 -0.1
5,795,487 - BT4398 0.83 -1.2
5,795,548 + BT4398 0.85 -1.9
5,795,549 - BT4398 0.85 -2.1
5,795,600 + BT4398 0.87 -1.2
5,795,600 + BT4398 0.87 -1.7
5,795,688 - BT4398 0.90 +1.9
5,795,776 + -2.4
5,795,819 - -0.1
5,795,828 + -0.2
5,796,089 - -1.9
5,796,152 + -2.1
5,796,205 + -1.5
5,796,350 + BT4399 0.22 -2.1
5,796,397 + BT4399 0.26 -0.1
5,796,437 - BT4399 0.29 -1.0
5,796,467 - BT4399 0.32 -2.7
5,796,511 - BT4399 0.36 +0.5
5,796,511 - BT4399 0.36 -1.1
5,796,516 + BT4399 0.36 -2.9
5,796,566 + BT4399 0.40 +2.0
5,796,566 + BT4399 0.40 -3.1
5,796,651 - BT4399 0.48 -1.7
5,796,838 - BT4399 0.64 -1.0
5,796,856 + BT4399 0.66 -2.1
5,796,856 + BT4399 0.66 -2.4
5,796,876 + BT4399 0.67 -2.4
5,796,876 + BT4399 0.67 -2.4
5,796,877 - BT4399 0.67 -0.1
5,796,877 - BT4399 0.67 -1.6

Or see this region's nucleotide sequence