Experiment: Heptanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20870 and RR42_RS20875 are separated by 499 nucleotides RR42_RS20875 and RR42_RS20880 are separated by 337 nucleotides RR42_RS20880 and RR42_RS20885 are separated by 99 nucleotides
RR42_RS20870: RR42_RS20870 - integrase, at 5,147 to 6,730
_RS20870
RR42_RS20875: RR42_RS20875 - LuxR family transcriptional regulator, at 7,230 to 8,090
_RS20875
RR42_RS20880: RR42_RS20880 - hypothetical protein, at 8,428 to 8,877
_RS20880
RR42_RS20885: RR42_RS20885 - hypothetical protein, at 8,977 to 9,243
_RS20885
Position (kb) 7
8
9 Strain fitness (log2 ratio) -2
-1
0
1
2 at 6.787 kb on + strand at 6.803 kb on + strand at 6.939 kb on + strand at 6.939 kb on + strand at 6.940 kb on - strand at 6.972 kb on + strand at 7.102 kb on + strand at 7.102 kb on + strand at 7.136 kb on - strand at 7.157 kb on - strand at 7.209 kb on - strand at 7.342 kb on + strand, within RR42_RS20875 at 7.343 kb on - strand, within RR42_RS20875 at 7.343 kb on - strand, within RR42_RS20875 at 7.343 kb on - strand, within RR42_RS20875 at 7.343 kb on - strand, within RR42_RS20875 at 7.343 kb on - strand, within RR42_RS20875 at 7.343 kb on - strand, within RR42_RS20875 at 7.348 kb on - strand, within RR42_RS20875 at 7.387 kb on - strand, within RR42_RS20875 at 7.691 kb on + strand, within RR42_RS20875 at 7.691 kb on + strand, within RR42_RS20875 at 7.692 kb on - strand, within RR42_RS20875 at 7.692 kb on - strand, within RR42_RS20875 at 7.811 kb on + strand, within RR42_RS20875 at 7.812 kb on - strand, within RR42_RS20875 at 7.812 kb on - strand, within RR42_RS20875 at 7.812 kb on - strand, within RR42_RS20875 at 7.814 kb on + strand, within RR42_RS20875 at 7.814 kb on + strand, within RR42_RS20875 at 7.814 kb on + strand, within RR42_RS20875 at 7.817 kb on + strand, within RR42_RS20875 at 7.831 kb on - strand, within RR42_RS20875 at 7.972 kb on - strand, within RR42_RS20875 at 8.096 kb on - strand at 8.211 kb on + strand at 8.211 kb on + strand at 8.310 kb on - strand at 8.325 kb on - strand at 8.325 kb on - strand at 8.383 kb on - strand at 8.561 kb on + strand, within RR42_RS20880 at 8.562 kb on - strand, within RR42_RS20880 at 8.707 kb on + strand, within RR42_RS20880 at 8.707 kb on + strand, within RR42_RS20880 at 8.864 kb on - strand at 8.900 kb on + strand at 8.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Heptanoic (C) remove 6,787 + -1.3 6,803 + -1.0 6,939 + -0.5 6,939 + -0.4 6,940 - +0.1 6,972 + -1.0 7,102 + +1.1 7,102 + +1.6 7,136 - -0.3 7,157 - +0.0 7,209 - +1.6 7,342 + RR42_RS20875 0.13 +0.4 7,343 - RR42_RS20875 0.13 -0.0 7,343 - RR42_RS20875 0.13 -0.6 7,343 - RR42_RS20875 0.13 -1.4 7,343 - RR42_RS20875 0.13 +0.2 7,343 - RR42_RS20875 0.13 -0.0 7,343 - RR42_RS20875 0.13 -2.0 7,348 - RR42_RS20875 0.14 +2.1 7,387 - RR42_RS20875 0.18 -0.7 7,691 + RR42_RS20875 0.54 -1.9 7,691 + RR42_RS20875 0.54 +0.3 7,692 - RR42_RS20875 0.54 -0.6 7,692 - RR42_RS20875 0.54 +0.0 7,811 + RR42_RS20875 0.67 -0.3 7,812 - RR42_RS20875 0.68 +1.6 7,812 - RR42_RS20875 0.68 +0.2 7,812 - RR42_RS20875 0.68 +0.2 7,814 + RR42_RS20875 0.68 -1.0 7,814 + RR42_RS20875 0.68 +0.4 7,814 + RR42_RS20875 0.68 +0.3 7,817 + RR42_RS20875 0.68 -0.6 7,831 - RR42_RS20875 0.70 +1.4 7,972 - RR42_RS20875 0.86 -0.7 8,096 - -0.6 8,211 + +0.5 8,211 + +0.8 8,310 - +0.7 8,325 - -0.1 8,325 - -0.4 8,383 - -0.4 8,561 + RR42_RS20880 0.30 -0.2 8,562 - RR42_RS20880 0.30 -1.0 8,707 + RR42_RS20880 0.62 -0.4 8,707 + RR42_RS20880 0.62 -1.4 8,864 - +0.0 8,900 + -0.2 8,901 - +0.4
Or see this region's nucleotide sequence