Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15065

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS15055 and RR42_RS15060 are separated by 206 nucleotidesRR42_RS15060 and RR42_RS15065 are separated by 198 nucleotidesRR42_RS15065 and RR42_RS15070 are separated by 5 nucleotidesRR42_RS15070 and RR42_RS15075 are separated by 10 nucleotides RR42_RS15055: RR42_RS15055 - hypothetical protein, at 3,257,514 to 3,258,233 _RS15055 RR42_RS15060: RR42_RS15060 - membrane protein, at 3,258,440 to 3,258,874 _RS15060 RR42_RS15065: RR42_RS15065 - serine kinase, at 3,259,073 to 3,260,056 _RS15065 RR42_RS15070: RR42_RS15070 - membrane protein, at 3,260,062 to 3,260,862 _RS15070 RR42_RS15075: RR42_RS15075 - hypothetical protein, at 3,260,873 to 3,261,592 _RS15075 Position (kb) 3259 3260 3261Strain fitness (log2 ratio) -1 0 1 2 3at 3258.165 kb on + strandat 3258.165 kb on + strandat 3258.165 kb on + strandat 3258.165 kb on + strandat 3258.171 kb on + strandat 3258.174 kb on + strandat 3258.174 kb on + strandat 3258.174 kb on + strandat 3258.175 kb on - strandat 3258.226 kb on - strandat 3258.336 kb on + strandat 3258.337 kb on - strandat 3258.728 kb on + strand, within RR42_RS15060at 3258.758 kb on + strand, within RR42_RS15060at 3258.785 kb on + strand, within RR42_RS15060at 3258.846 kb on + strandat 3260.069 kb on + strandat 3260.070 kb on - strandat 3260.095 kb on + strandat 3260.307 kb on - strand, within RR42_RS15070at 3260.310 kb on - strand, within RR42_RS15070at 3260.374 kb on + strand, within RR42_RS15070at 3260.374 kb on + strand, within RR42_RS15070at 3260.374 kb on + strand, within RR42_RS15070at 3260.374 kb on + strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.375 kb on - strand, within RR42_RS15070at 3260.524 kb on - strand, within RR42_RS15070at 3260.597 kb on + strand, within RR42_RS15070at 3260.597 kb on + strand, within RR42_RS15070at 3260.597 kb on + strand, within RR42_RS15070at 3260.779 kb on + strand, within RR42_RS15070at 3260.779 kb on + strand, within RR42_RS15070at 3260.792 kb on - strandat 3261.014 kb on + strand, within RR42_RS15075

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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3,258,165 + -0.3
3,258,165 + -0.7
3,258,165 + -0.5
3,258,165 + -0.9
3,258,171 + +2.3
3,258,174 + -0.9
3,258,174 + +0.5
3,258,174 + -0.3
3,258,175 - -0.1
3,258,226 - +2.9
3,258,336 + -0.1
3,258,337 - -0.6
3,258,728 + RR42_RS15060 0.66 +0.6
3,258,758 + RR42_RS15060 0.73 -0.8
3,258,785 + RR42_RS15060 0.79 +0.9
3,258,846 + -0.2
3,260,069 + -0.0
3,260,070 - +0.6
3,260,095 + +0.4
3,260,307 - RR42_RS15070 0.31 -0.7
3,260,310 - RR42_RS15070 0.31 -1.1
3,260,374 + RR42_RS15070 0.39 +1.9
3,260,374 + RR42_RS15070 0.39 +0.7
3,260,374 + RR42_RS15070 0.39 -0.9
3,260,374 + RR42_RS15070 0.39 +0.6
3,260,375 - RR42_RS15070 0.39 -0.5
3,260,375 - RR42_RS15070 0.39 -0.9
3,260,375 - RR42_RS15070 0.39 +0.3
3,260,375 - RR42_RS15070 0.39 -0.3
3,260,375 - RR42_RS15070 0.39 +0.3
3,260,375 - RR42_RS15070 0.39 -1.6
3,260,375 - RR42_RS15070 0.39 -0.2
3,260,375 - RR42_RS15070 0.39 -1.3
3,260,524 - RR42_RS15070 0.58 +0.6
3,260,597 + RR42_RS15070 0.67 +0.3
3,260,597 + RR42_RS15070 0.67 -0.3
3,260,597 + RR42_RS15070 0.67 +1.3
3,260,779 + RR42_RS15070 0.90 -1.2
3,260,779 + RR42_RS15070 0.90 +1.3
3,260,792 - +0.4
3,261,014 + RR42_RS15075 0.20 +0.3

Or see this region's nucleotide sequence