Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03040

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03030 and RR42_RS03035 overlap by 4 nucleotidesRR42_RS03035 and RR42_RS03040 overlap by 4 nucleotidesRR42_RS03040 and RR42_RS03045 are separated by 110 nucleotides RR42_RS03030: RR42_RS03030 - required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data), at 671,455 to 671,664 _RS03030 RR42_RS03035: RR42_RS03035 - membrane protein, at 671,661 to 672,629 _RS03035 RR42_RS03040: RR42_RS03040 - Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data), at 672,626 to 674,089 _RS03040 RR42_RS03045: RR42_RS03045 - dioxygenase, at 674,200 to 675,021 _RS03045 Position (kb) 672 673 674 675Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 671.639 kb on - strand, within RR42_RS03030at 671.639 kb on - strand, within RR42_RS03030at 671.678 kb on + strandat 671.699 kb on + strandat 671.752 kb on - strandat 671.754 kb on + strandat 671.754 kb on + strandat 672.147 kb on + strand, within RR42_RS03035at 672.704 kb on + strandat 672.704 kb on + strandat 672.818 kb on + strand, within RR42_RS03040at 673.181 kb on + strand, within RR42_RS03040at 673.182 kb on - strand, within RR42_RS03040at 673.182 kb on - strand, within RR42_RS03040at 673.182 kb on - strand, within RR42_RS03040at 673.333 kb on - strand, within RR42_RS03040at 673.436 kb on + strand, within RR42_RS03040at 673.814 kb on + strand, within RR42_RS03040at 673.815 kb on - strand, within RR42_RS03040at 673.897 kb on - strand, within RR42_RS03040at 673.897 kb on - strand, within RR42_RS03040at 673.897 kb on - strand, within RR42_RS03040at 673.898 kb on + strand, within RR42_RS03040at 673.898 kb on + strand, within RR42_RS03040at 673.898 kb on + strand, within RR42_RS03040at 673.899 kb on - strand, within RR42_RS03040at 673.919 kb on + strand, within RR42_RS03040at 673.920 kb on - strand, within RR42_RS03040at 674.127 kb on - strandat 674.216 kb on - strandat 674.407 kb on + strand, within RR42_RS03045at 674.408 kb on - strand, within RR42_RS03045at 674.408 kb on - strand, within RR42_RS03045at 674.408 kb on - strand, within RR42_RS03045at 674.473 kb on + strand, within RR42_RS03045at 674.474 kb on - strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.530 kb on + strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.531 kb on - strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.532 kb on + strand, within RR42_RS03045at 674.533 kb on - strand, within RR42_RS03045at 674.552 kb on - strand, within RR42_RS03045at 674.552 kb on - strand, within RR42_RS03045at 674.819 kb on - strand, within RR42_RS03045at 674.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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671,639 - RR42_RS03030 0.88 -2.4
671,639 - RR42_RS03030 0.88 +0.4
671,678 + -2.2
671,699 + -1.4
671,752 - -1.4
671,754 + -2.6
671,754 + -4.7
672,147 + RR42_RS03035 0.50 -1.0
672,704 + -3.3
672,704 + -2.2
672,818 + RR42_RS03040 0.13 -1.6
673,181 + RR42_RS03040 0.38 -3.2
673,182 - RR42_RS03040 0.38 -0.2
673,182 - RR42_RS03040 0.38 -1.2
673,182 - RR42_RS03040 0.38 -0.4
673,333 - RR42_RS03040 0.48 -0.6
673,436 + RR42_RS03040 0.55 -3.4
673,814 + RR42_RS03040 0.81 -3.9
673,815 - RR42_RS03040 0.81 -2.0
673,897 - RR42_RS03040 0.87 -2.5
673,897 - RR42_RS03040 0.87 -1.8
673,897 - RR42_RS03040 0.87 -2.9
673,898 + RR42_RS03040 0.87 -1.7
673,898 + RR42_RS03040 0.87 -3.7
673,898 + RR42_RS03040 0.87 -1.9
673,899 - RR42_RS03040 0.87 -3.1
673,919 + RR42_RS03040 0.88 -1.4
673,920 - RR42_RS03040 0.88 -5.0
674,127 - +0.4
674,216 - -0.7
674,407 + RR42_RS03045 0.25 +1.4
674,408 - RR42_RS03045 0.25 +0.2
674,408 - RR42_RS03045 0.25 -0.0
674,408 - RR42_RS03045 0.25 +0.4
674,473 + RR42_RS03045 0.33 +2.4
674,474 - RR42_RS03045 0.33 -0.3
674,530 + RR42_RS03045 0.40 -0.5
674,530 + RR42_RS03045 0.40 +1.4
674,530 + RR42_RS03045 0.40 +0.6
674,530 + RR42_RS03045 0.40 -0.2
674,530 + RR42_RS03045 0.40 +1.4
674,531 - RR42_RS03045 0.40 +1.0
674,531 - RR42_RS03045 0.40 +0.4
674,531 - RR42_RS03045 0.40 +0.5
674,531 - RR42_RS03045 0.40 -0.1
674,531 - RR42_RS03045 0.40 +0.7
674,531 - RR42_RS03045 0.40 +0.4
674,531 - RR42_RS03045 0.40 +2.4
674,531 - RR42_RS03045 0.40 -1.0
674,532 + RR42_RS03045 0.40 +0.5
674,532 + RR42_RS03045 0.40 +0.6
674,532 + RR42_RS03045 0.40 +0.4
674,532 + RR42_RS03045 0.40 -0.6
674,532 + RR42_RS03045 0.40 -0.6
674,533 - RR42_RS03045 0.41 -0.1
674,552 - RR42_RS03045 0.43 -0.8
674,552 - RR42_RS03045 0.43 -0.3
674,819 - RR42_RS03045 0.75 +0.4
674,969 + +0.4

Or see this region's nucleotide sequence