Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00770

Experiment: Heptanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00760 and RR42_RS00765 are separated by 149 nucleotidesRR42_RS00765 and RR42_RS00770 are separated by 177 nucleotidesRR42_RS00770 and RR42_RS00775 are separated by 35 nucleotides RR42_RS00760: RR42_RS00760 - hypothetical protein, at 190,640 to 190,897 _RS00760 RR42_RS00765: RR42_RS00765 - sulfurtransferase, at 191,047 to 191,439 _RS00765 RR42_RS00770: RR42_RS00770 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 191,617 to 192,684 _RS00770 RR42_RS00775: RR42_RS00775 - methionine synthase, at 192,720 to 195,467 _RS00775 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2at 190.634 kb on + strandat 190.635 kb on - strandat 190.635 kb on - strandat 190.653 kb on - strandat 190.653 kb on - strandat 190.725 kb on - strand, within RR42_RS00760at 190.864 kb on + strand, within RR42_RS00760at 190.864 kb on + strand, within RR42_RS00760at 190.865 kb on - strand, within RR42_RS00760at 190.865 kb on - strand, within RR42_RS00760at 190.895 kb on + strandat 190.896 kb on - strandat 190.896 kb on - strandat 190.964 kb on - strandat 190.998 kb on + strandat 190.998 kb on + strandat 191.051 kb on + strandat 191.051 kb on + strandat 191.052 kb on - strandat 191.052 kb on - strandat 191.052 kb on - strandat 191.094 kb on + strand, within RR42_RS00765at 191.094 kb on + strand, within RR42_RS00765at 191.094 kb on + strand, within RR42_RS00765at 191.094 kb on + strand, within RR42_RS00765at 191.095 kb on - strand, within RR42_RS00765at 191.095 kb on - strand, within RR42_RS00765at 191.147 kb on + strand, within RR42_RS00765at 191.148 kb on - strand, within RR42_RS00765at 191.351 kb on + strand, within RR42_RS00765at 191.351 kb on + strand, within RR42_RS00765at 191.352 kb on - strand, within RR42_RS00765at 191.352 kb on - strand, within RR42_RS00765at 191.352 kb on - strand, within RR42_RS00765at 191.374 kb on + strand, within RR42_RS00765at 191.487 kb on + strandat 191.573 kb on + strandat 191.573 kb on + strandat 191.573 kb on + strandat 191.574 kb on - strandat 191.574 kb on - strandat 191.662 kb on + strandat 191.663 kb on - strandat 191.746 kb on + strand, within RR42_RS00770at 191.746 kb on + strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.747 kb on - strand, within RR42_RS00770at 191.832 kb on - strand, within RR42_RS00770at 191.869 kb on + strand, within RR42_RS00770at 191.870 kb on - strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.904 kb on + strand, within RR42_RS00770at 191.905 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 191.939 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.011 kb on - strand, within RR42_RS00770at 192.090 kb on - strand, within RR42_RS00770at 192.090 kb on - strand, within RR42_RS00770at 192.139 kb on + strand, within RR42_RS00770at 192.140 kb on - strand, within RR42_RS00770at 192.140 kb on - strand, within RR42_RS00770at 192.142 kb on + strand, within RR42_RS00770at 192.143 kb on - strand, within RR42_RS00770at 192.143 kb on - strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.421 kb on + strand, within RR42_RS00770at 192.609 kb on + strandat 193.246 kb on - strand, within RR42_RS00775at 193.246 kb on - strand, within RR42_RS00775at 193.246 kb on - strand, within RR42_RS00775at 193.344 kb on + strand, within RR42_RS00775at 193.396 kb on - strand, within RR42_RS00775at 193.396 kb on - strand, within RR42_RS00775at 193.427 kb on - strand, within RR42_RS00775at 193.485 kb on + strand, within RR42_RS00775at 193.546 kb on - strand, within RR42_RS00775

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Per-strain Table

Position Strand Gene LocusTag Fraction Heptanoic (C)
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190,634 + -2.5
190,635 - +0.4
190,635 - -1.8
190,653 - -0.0
190,653 - +0.6
190,725 - RR42_RS00760 0.33 -0.1
190,864 + RR42_RS00760 0.87 +0.5
190,864 + RR42_RS00760 0.87 -0.4
190,865 - RR42_RS00760 0.87 +0.2
190,865 - RR42_RS00760 0.87 -0.4
190,895 + -0.5
190,896 - -1.2
190,896 - -0.5
190,964 - +1.6
190,998 + +1.3
190,998 + -1.3
191,051 + +0.3
191,051 + +0.1
191,052 - +0.1
191,052 - +0.2
191,052 - -0.4
191,094 + RR42_RS00765 0.12 +0.0
191,094 + RR42_RS00765 0.12 -0.4
191,094 + RR42_RS00765 0.12 -1.0
191,094 + RR42_RS00765 0.12 -0.5
191,095 - RR42_RS00765 0.12 +0.6
191,095 - RR42_RS00765 0.12 -0.8
191,147 + RR42_RS00765 0.25 -1.1
191,148 - RR42_RS00765 0.26 -0.3
191,351 + RR42_RS00765 0.77 +0.6
191,351 + RR42_RS00765 0.77 +0.5
191,352 - RR42_RS00765 0.78 +0.6
191,352 - RR42_RS00765 0.78 +0.8
191,352 - RR42_RS00765 0.78 -0.2
191,374 + RR42_RS00765 0.83 -0.1
191,487 + +0.3
191,573 + +0.1
191,573 + -0.7
191,573 + +0.5
191,574 - +0.4
191,574 - -1.7
191,662 + -0.2
191,663 - +0.2
191,746 + RR42_RS00770 0.12 -0.5
191,746 + RR42_RS00770 0.12 +0.6
191,747 - RR42_RS00770 0.12 +0.1
191,747 - RR42_RS00770 0.12 -0.1
191,747 - RR42_RS00770 0.12 +1.6
191,832 - RR42_RS00770 0.20 +0.6
191,869 + RR42_RS00770 0.24 +1.0
191,870 - RR42_RS00770 0.24 +0.0
191,904 + RR42_RS00770 0.27 +0.8
191,904 + RR42_RS00770 0.27 -1.1
191,904 + RR42_RS00770 0.27 -0.1
191,904 + RR42_RS00770 0.27 -1.5
191,905 - RR42_RS00770 0.27 +0.9
191,939 - RR42_RS00770 0.30 +0.8
191,939 - RR42_RS00770 0.30 +0.2
191,939 - RR42_RS00770 0.30 +0.9
192,011 - RR42_RS00770 0.37 +0.4
192,011 - RR42_RS00770 0.37 -0.7
192,011 - RR42_RS00770 0.37 -0.2
192,090 - RR42_RS00770 0.44 -0.7
192,090 - RR42_RS00770 0.44 +2.1
192,139 + RR42_RS00770 0.49 +0.1
192,140 - RR42_RS00770 0.49 -0.3
192,140 - RR42_RS00770 0.49 +0.3
192,142 + RR42_RS00770 0.49 +1.2
192,143 - RR42_RS00770 0.49 +0.3
192,143 - RR42_RS00770 0.49 -0.4
192,421 + RR42_RS00770 0.75 +0.6
192,421 + RR42_RS00770 0.75 +0.3
192,421 + RR42_RS00770 0.75 -1.0
192,609 + +0.2
193,246 - RR42_RS00775 0.19 +0.8
193,246 - RR42_RS00775 0.19 -0.6
193,246 - RR42_RS00775 0.19 -0.3
193,344 + RR42_RS00775 0.23 +0.5
193,396 - RR42_RS00775 0.25 -0.5
193,396 - RR42_RS00775 0.25 -0.4
193,427 - RR42_RS00775 0.26 +0.2
193,485 + RR42_RS00775 0.28 -0.2
193,546 - RR42_RS00775 0.30 -0.1

Or see this region's nucleotide sequence