Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26390

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26385 and RR42_RS26390 are separated by 34 nucleotidesRR42_RS26390 and RR42_RS26395 overlap by 4 nucleotides RR42_RS26385: RR42_RS26385 - hypothetical protein, at 1,276,053 to 1,277,435 _RS26385 RR42_RS26390: RR42_RS26390 - MacB family efflux pump subunit, at 1,277,470 to 1,279,470 _RS26390 RR42_RS26395: RR42_RS26395 - hemolysin secretion protein D, at 1,279,467 to 1,280,600 _RS26395 Position (kb) 1277 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1 2at 1276.526 kb on - strand, within RR42_RS26385at 1277.044 kb on + strand, within RR42_RS26385at 1277.045 kb on - strand, within RR42_RS26385at 1277.045 kb on - strand, within RR42_RS26385at 1277.471 kb on + strandat 1277.527 kb on - strandat 1277.528 kb on + strandat 1277.528 kb on + strandat 1277.528 kb on + strandat 1277.528 kb on + strandat 1277.903 kb on + strand, within RR42_RS26390at 1277.908 kb on - strand, within RR42_RS26390at 1277.908 kb on - strand, within RR42_RS26390at 1278.064 kb on - strand, within RR42_RS26390at 1278.389 kb on + strand, within RR42_RS26390at 1278.390 kb on - strand, within RR42_RS26390at 1278.524 kb on + strand, within RR42_RS26390at 1278.525 kb on - strand, within RR42_RS26390at 1278.525 kb on - strand, within RR42_RS26390at 1278.930 kb on + strand, within RR42_RS26390at 1279.182 kb on - strand, within RR42_RS26390at 1279.195 kb on - strand, within RR42_RS26390at 1279.625 kb on - strand, within RR42_RS26395at 1279.831 kb on + strand, within RR42_RS26395at 1279.963 kb on - strand, within RR42_RS26395at 1279.963 kb on - strand, within RR42_RS26395at 1280.047 kb on + strand, within RR42_RS26395at 1280.047 kb on + strand, within RR42_RS26395at 1280.047 kb on + strand, within RR42_RS26395at 1280.048 kb on - strand, within RR42_RS26395at 1280.048 kb on - strand, within RR42_RS26395at 1280.374 kb on + strand, within RR42_RS26395at 1280.430 kb on + strand, within RR42_RS26395at 1280.430 kb on + strand, within RR42_RS26395at 1280.431 kb on - strand, within RR42_RS26395

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,276,526 - RR42_RS26385 0.34 +0.3
1,277,044 + RR42_RS26385 0.72 +0.6
1,277,045 - RR42_RS26385 0.72 +0.4
1,277,045 - RR42_RS26385 0.72 -0.0
1,277,471 + +0.2
1,277,527 - +0.5
1,277,528 + -0.8
1,277,528 + -0.0
1,277,528 + -0.8
1,277,528 + +0.8
1,277,903 + RR42_RS26390 0.22 -1.3
1,277,908 - RR42_RS26390 0.22 +1.0
1,277,908 - RR42_RS26390 0.22 +0.1
1,278,064 - RR42_RS26390 0.30 +0.5
1,278,389 + RR42_RS26390 0.46 +0.5
1,278,390 - RR42_RS26390 0.46 -1.3
1,278,524 + RR42_RS26390 0.53 +0.2
1,278,525 - RR42_RS26390 0.53 +0.8
1,278,525 - RR42_RS26390 0.53 -0.2
1,278,930 + RR42_RS26390 0.73 +0.0
1,279,182 - RR42_RS26390 0.86 -0.4
1,279,195 - RR42_RS26390 0.86 +0.1
1,279,625 - RR42_RS26395 0.14 +2.2
1,279,831 + RR42_RS26395 0.32 -2.1
1,279,963 - RR42_RS26395 0.44 -1.3
1,279,963 - RR42_RS26395 0.44 +0.5
1,280,047 + RR42_RS26395 0.51 +0.2
1,280,047 + RR42_RS26395 0.51 -0.1
1,280,047 + RR42_RS26395 0.51 -0.3
1,280,048 - RR42_RS26395 0.51 +0.5
1,280,048 - RR42_RS26395 0.51 +0.0
1,280,374 + RR42_RS26395 0.80 -0.0
1,280,430 + RR42_RS26395 0.85 -0.0
1,280,430 + RR42_RS26395 0.85 +0.0
1,280,431 - RR42_RS26395 0.85 -1.1

Or see this region's nucleotide sequence