Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20070 and RR42_RS20075 are separated by 113 nucleotides RR42_RS20075 and RR42_RS20080 are separated by 31 nucleotides RR42_RS20080 and RR42_RS20085 are separated by 91 nucleotides RR42_RS20085 and RR42_RS20090 are separated by 54 nucleotides
RR42_RS20070: RR42_RS20070 - glycine dehydrogenase, at 4,336,020 to 4,338,941
_RS20070
RR42_RS20075: RR42_RS20075 - hypothetical protein, at 4,339,055 to 4,339,597
_RS20075
RR42_RS20080: RR42_RS20080 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 4,339,629 to 4,341,005
_RS20080
RR42_RS20085: RR42_RS20085 - ethyl tert-butyl ether degradation protein EthD, at 4,341,097 to 4,341,420
_RS20085
RR42_RS20090: RR42_RS20090 - Zn-dependent hydrolase, at 4,341,475 to 4,342,212
_RS20090
Position (kb) 4339
4340
4341
4342 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4338.665 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.798 kb on + strand at 4338.799 kb on - strand at 4338.799 kb on - strand at 4338.850 kb on - strand at 4338.882 kb on + strand at 4338.927 kb on + strand at 4338.927 kb on + strand at 4338.928 kb on - strand at 4338.939 kb on + strand at 4338.939 kb on + strand at 4338.940 kb on - strand at 4339.165 kb on + strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.166 kb on - strand, within RR42_RS20075 at 4339.353 kb on + strand, within RR42_RS20075 at 4339.353 kb on + strand, within RR42_RS20075 at 4339.354 kb on - strand, within RR42_RS20075 at 4339.625 kb on + strand at 4339.779 kb on + strand, within RR42_RS20080 at 4339.779 kb on + strand, within RR42_RS20080 at 4339.779 kb on + strand, within RR42_RS20080 at 4339.780 kb on - strand, within RR42_RS20080 at 4339.780 kb on - strand, within RR42_RS20080 at 4339.780 kb on - strand, within RR42_RS20080 at 4340.061 kb on + strand, within RR42_RS20080 at 4340.061 kb on + strand, within RR42_RS20080 at 4340.108 kb on + strand, within RR42_RS20080 at 4340.108 kb on + strand, within RR42_RS20080 at 4340.115 kb on - strand, within RR42_RS20080 at 4340.419 kb on + strand, within RR42_RS20080 at 4340.439 kb on + strand, within RR42_RS20080 at 4340.439 kb on + strand, within RR42_RS20080 at 4340.439 kb on + strand, within RR42_RS20080 at 4340.535 kb on + strand, within RR42_RS20080 at 4340.535 kb on + strand, within RR42_RS20080 at 4340.536 kb on - strand, within RR42_RS20080 at 4340.536 kb on - strand, within RR42_RS20080 at 4340.536 kb on - strand, within RR42_RS20080 at 4340.536 kb on - strand, within RR42_RS20080 at 4340.538 kb on + strand, within RR42_RS20080 at 4340.538 kb on + strand, within RR42_RS20080 at 4340.539 kb on - strand, within RR42_RS20080 at 4340.539 kb on - strand, within RR42_RS20080 at 4340.616 kb on + strand, within RR42_RS20080 at 4340.616 kb on + strand, within RR42_RS20080 at 4340.617 kb on - strand, within RR42_RS20080 at 4340.617 kb on - strand, within RR42_RS20080 at 4340.617 kb on - strand, within RR42_RS20080 at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.892 kb on + strand at 4340.893 kb on - strand at 4340.893 kb on - strand at 4340.893 kb on - strand at 4340.893 kb on - strand at 4340.893 kb on - strand at 4340.893 kb on - strand at 4340.893 kb on - strand at 4340.956 kb on - strand at 4341.044 kb on + strand at 4341.045 kb on - strand at 4341.045 kb on - strand at 4341.045 kb on - strand at 4341.061 kb on + strand at 4341.119 kb on - strand at 4341.154 kb on + strand, within RR42_RS20085 at 4341.155 kb on - strand, within RR42_RS20085 at 4341.155 kb on - strand, within RR42_RS20085 at 4341.155 kb on - strand, within RR42_RS20085 at 4341.155 kb on - strand, within RR42_RS20085 at 4341.155 kb on - strand, within RR42_RS20085 at 4341.157 kb on + strand, within RR42_RS20085 at 4341.157 kb on + strand, within RR42_RS20085 at 4341.158 kb on - strand, within RR42_RS20085 at 4341.367 kb on + strand, within RR42_RS20085 at 4341.367 kb on + strand, within RR42_RS20085 at 4341.367 kb on + strand, within RR42_RS20085 at 4341.368 kb on - strand, within RR42_RS20085 at 4341.368 kb on - strand, within RR42_RS20085 at 4341.441 kb on - strand at 4341.447 kb on + strand at 4341.447 kb on + strand at 4341.448 kb on - strand at 4341.448 kb on - strand at 4341.448 kb on - strand at 4341.448 kb on - strand at 4341.517 kb on + strand at 4341.517 kb on + strand at 4341.517 kb on + strand at 4341.517 kb on + strand at 4341.517 kb on + strand at 4341.518 kb on - strand at 4341.518 kb on - strand at 4341.518 kb on - strand at 4341.518 kb on - strand at 4341.523 kb on + strand at 4341.523 kb on + strand at 4341.523 kb on + strand at 4341.523 kb on + strand at 4341.523 kb on + strand at 4341.523 kb on + strand at 4341.524 kb on - strand at 4341.524 kb on - strand at 4341.524 kb on - strand at 4341.524 kb on - strand at 4341.705 kb on + strand, within RR42_RS20090 at 4341.835 kb on + strand, within RR42_RS20090 at 4341.835 kb on + strand, within RR42_RS20090 at 4341.835 kb on + strand, within RR42_RS20090 at 4341.835 kb on + strand, within RR42_RS20090 at 4341.835 kb on + strand, within RR42_RS20090 at 4341.835 kb on + strand, within RR42_RS20090 at 4341.952 kb on + strand, within RR42_RS20090 at 4341.952 kb on + strand, within RR42_RS20090
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 4,338,665 + +3.2 4,338,798 + -1.2 4,338,798 + +0.2 4,338,798 + -0.4 4,338,798 + -1.1 4,338,798 + -1.0 4,338,799 - -0.1 4,338,799 - -0.4 4,338,850 - +0.5 4,338,882 + -1.5 4,338,927 + -0.7 4,338,927 + +0.4 4,338,928 - +0.1 4,338,939 + -1.2 4,338,939 + -1.0 4,338,940 - -1.5 4,339,165 + RR42_RS20075 0.20 +1.6 4,339,166 - RR42_RS20075 0.20 +2.1 4,339,166 - RR42_RS20075 0.20 -0.0 4,339,166 - RR42_RS20075 0.20 -1.0 4,339,166 - RR42_RS20075 0.20 -1.0 4,339,353 + RR42_RS20075 0.55 +0.0 4,339,353 + RR42_RS20075 0.55 -1.4 4,339,354 - RR42_RS20075 0.55 -0.5 4,339,625 + -0.2 4,339,779 + RR42_RS20080 0.11 +0.0 4,339,779 + RR42_RS20080 0.11 +0.3 4,339,779 + RR42_RS20080 0.11 -0.1 4,339,780 - RR42_RS20080 0.11 +0.4 4,339,780 - RR42_RS20080 0.11 +0.5 4,339,780 - RR42_RS20080 0.11 +0.4 4,340,061 + RR42_RS20080 0.31 +1.6 4,340,061 + RR42_RS20080 0.31 +0.3 4,340,108 + RR42_RS20080 0.35 +0.3 4,340,108 + RR42_RS20080 0.35 +0.8 4,340,115 - RR42_RS20080 0.35 +0.1 4,340,419 + RR42_RS20080 0.57 -0.1 4,340,439 + RR42_RS20080 0.59 +0.3 4,340,439 + RR42_RS20080 0.59 +0.1 4,340,439 + RR42_RS20080 0.59 -0.7 4,340,535 + RR42_RS20080 0.66 -1.1 4,340,535 + RR42_RS20080 0.66 +0.6 4,340,536 - RR42_RS20080 0.66 +1.6 4,340,536 - RR42_RS20080 0.66 -1.8 4,340,536 - RR42_RS20080 0.66 +0.1 4,340,536 - RR42_RS20080 0.66 +1.1 4,340,538 + RR42_RS20080 0.66 +0.9 4,340,538 + RR42_RS20080 0.66 +0.3 4,340,539 - RR42_RS20080 0.66 -0.4 4,340,539 - RR42_RS20080 0.66 +0.4 4,340,616 + RR42_RS20080 0.72 +0.6 4,340,616 + RR42_RS20080 0.72 +0.1 4,340,617 - RR42_RS20080 0.72 -0.2 4,340,617 - RR42_RS20080 0.72 +1.0 4,340,617 - RR42_RS20080 0.72 +1.3 4,340,892 + +0.9 4,340,892 + +0.0 4,340,892 + -0.5 4,340,892 + -0.4 4,340,892 + -0.4 4,340,892 + +0.9 4,340,892 + +0.4 4,340,892 + -1.4 4,340,893 - +1.3 4,340,893 - +0.4 4,340,893 - +1.8 4,340,893 - -2.1 4,340,893 - +1.9 4,340,893 - -0.5 4,340,893 - -1.2 4,340,956 - -0.2 4,341,044 + +0.3 4,341,045 - -0.3 4,341,045 - +0.1 4,341,045 - +0.7 4,341,061 + +0.7 4,341,119 - +1.6 4,341,154 + RR42_RS20085 0.18 +0.8 4,341,155 - RR42_RS20085 0.18 -1.1 4,341,155 - RR42_RS20085 0.18 +0.4 4,341,155 - RR42_RS20085 0.18 +0.6 4,341,155 - RR42_RS20085 0.18 +0.0 4,341,155 - RR42_RS20085 0.18 +0.6 4,341,157 + RR42_RS20085 0.19 -0.6 4,341,157 + RR42_RS20085 0.19 -0.1 4,341,158 - RR42_RS20085 0.19 -0.0 4,341,367 + RR42_RS20085 0.83 +0.2 4,341,367 + RR42_RS20085 0.83 +0.5 4,341,367 + RR42_RS20085 0.83 +1.0 4,341,368 - RR42_RS20085 0.84 +0.3 4,341,368 - RR42_RS20085 0.84 -1.8 4,341,441 - -0.3 4,341,447 + -1.0 4,341,447 + -0.2 4,341,448 - +0.6 4,341,448 - +0.5 4,341,448 - +0.8 4,341,448 - -0.3 4,341,517 + -0.5 4,341,517 + -0.0 4,341,517 + +1.2 4,341,517 + +0.7 4,341,517 + -1.0 4,341,518 - +0.5 4,341,518 - +0.4 4,341,518 - +0.5 4,341,518 - -0.8 4,341,523 + -0.5 4,341,523 + -0.5 4,341,523 + +0.9 4,341,523 + -0.1 4,341,523 + -0.1 4,341,523 + -1.3 4,341,524 - -0.1 4,341,524 - +1.5 4,341,524 - +0.8 4,341,524 - -0.8 4,341,705 + RR42_RS20090 0.31 +0.2 4,341,835 + RR42_RS20090 0.49 -0.2 4,341,835 + RR42_RS20090 0.49 -0.7 4,341,835 + RR42_RS20090 0.49 -0.2 4,341,835 + RR42_RS20090 0.49 -2.3 4,341,835 + RR42_RS20090 0.49 -0.2 4,341,835 + RR42_RS20090 0.49 -0.0 4,341,952 + RR42_RS20090 0.65 -1.1 4,341,952 + RR42_RS20090 0.65 +1.1
Or see this region's nucleotide sequence