Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19040

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19035 and RR42_RS19040 are separated by 356 nucleotidesRR42_RS19040 and RR42_RS19045 are separated by 82 nucleotidesRR42_RS19045 and RR42_RS19050 are separated by 420 nucleotides RR42_RS19035: RR42_RS19035 - pilus assembly protein PilM, at 4,122,965 to 4,124,050 _RS19035 RR42_RS19040: RR42_RS19040 - penicillin-binding protein, at 4,124,407 to 4,126,779 _RS19040 RR42_RS19045: RR42_RS19045 - frataxin, at 4,126,862 to 4,127,197 _RS19045 RR42_RS19050: RR42_RS19050 - diaminopimelate decarboxylase, at 4,127,618 to 4,128,886 _RS19050 Position (kb) 4124 4125 4126 4127Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4123.696 kb on - strand, within RR42_RS19035at 4123.728 kb on + strand, within RR42_RS19035at 4123.729 kb on - strand, within RR42_RS19035at 4123.729 kb on - strand, within RR42_RS19035at 4123.871 kb on - strand, within RR42_RS19035at 4123.900 kb on + strand, within RR42_RS19035at 4123.901 kb on - strand, within RR42_RS19035at 4123.938 kb on + strand, within RR42_RS19035at 4123.974 kb on - strandat 4123.974 kb on - strandat 4123.978 kb on + strandat 4123.979 kb on - strandat 4124.014 kb on + strandat 4124.014 kb on + strandat 4124.014 kb on + strandat 4124.109 kb on + strandat 4124.110 kb on - strandat 4124.110 kb on - strandat 4124.110 kb on - strandat 4124.141 kb on + strandat 4124.304 kb on + strandat 4124.305 kb on - strandat 4124.305 kb on - strandat 4124.305 kb on - strandat 4124.314 kb on - strandat 4124.314 kb on - strandat 4124.372 kb on + strandat 4124.372 kb on + strandat 4124.372 kb on + strandat 4124.372 kb on + strandat 4124.372 kb on + strandat 4124.372 kb on + strandat 4124.373 kb on - strandat 4124.373 kb on - strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.374 kb on + strandat 4124.389 kb on + strandat 4124.389 kb on + strandat 4124.389 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.393 kb on + strandat 4124.397 kb on + strandat 4124.397 kb on + strandat 4126.911 kb on - strand, within RR42_RS19045at 4127.230 kb on + strandat 4127.240 kb on + strandat 4127.260 kb on + strandat 4127.260 kb on + strandat 4127.351 kb on + strandat 4127.351 kb on + strandat 4127.491 kb on + strandat 4127.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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4,123,696 - RR42_RS19035 0.67 +0.5
4,123,728 + RR42_RS19035 0.70 -0.2
4,123,729 - RR42_RS19035 0.70 -0.4
4,123,729 - RR42_RS19035 0.70 +0.3
4,123,871 - RR42_RS19035 0.83 +0.1
4,123,900 + RR42_RS19035 0.86 -1.4
4,123,901 - RR42_RS19035 0.86 +0.7
4,123,938 + RR42_RS19035 0.90 +1.2
4,123,974 - -0.2
4,123,974 - -1.2
4,123,978 + -0.1
4,123,979 - -0.6
4,124,014 + +1.2
4,124,014 + -0.4
4,124,014 + -0.4
4,124,109 + +0.1
4,124,110 - -1.1
4,124,110 - +2.2
4,124,110 - +1.5
4,124,141 + -0.2
4,124,304 + +0.4
4,124,305 - -1.2
4,124,305 - -1.0
4,124,305 - -2.2
4,124,314 - +1.0
4,124,314 - -0.6
4,124,372 + +0.0
4,124,372 + +0.2
4,124,372 + -0.3
4,124,372 + -0.5
4,124,372 + +3.2
4,124,372 + -0.4
4,124,373 - +1.6
4,124,373 - -0.6
4,124,374 + -0.8
4,124,374 + -1.7
4,124,374 + -0.4
4,124,374 + -0.6
4,124,374 + +0.9
4,124,374 + -0.2
4,124,374 + +2.0
4,124,374 + +0.6
4,124,374 + -1.6
4,124,389 + -0.7
4,124,389 + -0.4
4,124,389 + -1.0
4,124,393 + +0.0
4,124,393 + -1.4
4,124,393 + +0.9
4,124,393 + -0.7
4,124,393 + -1.6
4,124,393 + -0.7
4,124,393 + -0.3
4,124,393 + -0.0
4,124,393 + +0.6
4,124,393 + +0.2
4,124,393 + +0.2
4,124,397 + -1.2
4,124,397 + -0.1
4,126,911 - RR42_RS19045 0.15 -0.4
4,127,230 + +0.9
4,127,240 + -1.3
4,127,260 + -1.9
4,127,260 + +0.1
4,127,351 + -0.5
4,127,351 + +0.1
4,127,491 + +0.4
4,127,613 + -0.8

Or see this region's nucleotide sequence