Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17315 and RR42_RS17320 are separated by 164 nucleotides RR42_RS17320 and RR42_RS17325 overlap by 4 nucleotides RR42_RS17325 and RR42_RS17330 are separated by 36 nucleotides
RR42_RS17315: RR42_RS17315 - D-lactate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6) <small>(from data)</small>, at 3,749,649 to 3,750,914
_RS17315
RR42_RS17320: RR42_RS17320 - murein hydrolase transporter LrgA, at 3,751,079 to 3,751,465
_RS17320
RR42_RS17325: RR42_RS17325 - membrane protein, at 3,751,462 to 3,752,184
_RS17325
RR42_RS17330: RR42_RS17330 - glyoxalase, at 3,752,221 to 3,752,628
_RS17330
Position (kb) 3751
3752 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3750.335 kb on + strand, within RR42_RS17315 at 3750.335 kb on + strand, within RR42_RS17315 at 3750.336 kb on - strand, within RR42_RS17315 at 3750.336 kb on - strand, within RR42_RS17315 at 3750.336 kb on - strand, within RR42_RS17315 at 3750.433 kb on - strand at 3750.462 kb on + strand, within RR42_RS17315 at 3750.606 kb on + strand, within RR42_RS17315 at 3750.606 kb on + strand, within RR42_RS17315 at 3750.607 kb on - strand, within RR42_RS17315 at 3750.735 kb on + strand, within RR42_RS17315 at 3750.736 kb on - strand, within RR42_RS17315 at 3750.736 kb on - strand, within RR42_RS17315 at 3750.736 kb on - strand, within RR42_RS17315 at 3750.763 kb on - strand, within RR42_RS17315 at 3750.830 kb on + strand at 3750.913 kb on - strand at 3750.913 kb on - strand at 3750.913 kb on - strand at 3751.136 kb on + strand, within RR42_RS17320 at 3751.136 kb on + strand, within RR42_RS17320 at 3751.137 kb on - strand, within RR42_RS17320 at 3751.492 kb on + strand at 3751.493 kb on - strand at 3751.527 kb on + strand at 3751.540 kb on + strand, within RR42_RS17325 at 3751.561 kb on + strand, within RR42_RS17325 at 3751.561 kb on + strand, within RR42_RS17325 at 3751.562 kb on - strand, within RR42_RS17325 at 3751.562 kb on - strand, within RR42_RS17325 at 3751.651 kb on + strand, within RR42_RS17325 at 3751.660 kb on + strand, within RR42_RS17325 at 3751.660 kb on + strand, within RR42_RS17325 at 3751.660 kb on + strand, within RR42_RS17325 at 3751.661 kb on - strand, within RR42_RS17325 at 3751.661 kb on - strand, within RR42_RS17325 at 3751.661 kb on - strand, within RR42_RS17325 at 3751.661 kb on - strand, within RR42_RS17325 at 3751.729 kb on + strand, within RR42_RS17325 at 3752.018 kb on - strand, within RR42_RS17325 at 3752.273 kb on + strand, within RR42_RS17330 at 3752.273 kb on + strand, within RR42_RS17330 at 3752.274 kb on - strand, within RR42_RS17330 at 3752.326 kb on + strand, within RR42_RS17330 at 3752.385 kb on + strand, within RR42_RS17330 at 3752.385 kb on + strand, within RR42_RS17330 at 3752.386 kb on - strand, within RR42_RS17330 at 3752.386 kb on - strand, within RR42_RS17330 at 3752.464 kb on + strand, within RR42_RS17330 at 3752.465 kb on - strand, within RR42_RS17330
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 3,750,335 + RR42_RS17315 0.54 -0.3 3,750,335 + RR42_RS17315 0.54 +1.2 3,750,336 - RR42_RS17315 0.54 -1.0 3,750,336 - RR42_RS17315 0.54 +0.6 3,750,336 - RR42_RS17315 0.54 -1.4 3,750,433 - +0.7 3,750,462 + RR42_RS17315 0.64 -0.3 3,750,606 + RR42_RS17315 0.76 +0.3 3,750,606 + RR42_RS17315 0.76 -1.3 3,750,607 - RR42_RS17315 0.76 +0.2 3,750,735 + RR42_RS17315 0.86 +0.3 3,750,736 - RR42_RS17315 0.86 +0.9 3,750,736 - RR42_RS17315 0.86 -0.1 3,750,736 - RR42_RS17315 0.86 +0.5 3,750,763 - RR42_RS17315 0.88 -0.7 3,750,830 + +0.6 3,750,913 - +1.5 3,750,913 - -1.0 3,750,913 - -0.2 3,751,136 + RR42_RS17320 0.15 -0.1 3,751,136 + RR42_RS17320 0.15 +1.5 3,751,137 - RR42_RS17320 0.15 +0.8 3,751,492 + -1.9 3,751,493 - -0.2 3,751,527 + -0.4 3,751,540 + RR42_RS17325 0.11 +0.5 3,751,561 + RR42_RS17325 0.14 +1.0 3,751,561 + RR42_RS17325 0.14 -0.5 3,751,562 - RR42_RS17325 0.14 +0.3 3,751,562 - RR42_RS17325 0.14 +0.0 3,751,651 + RR42_RS17325 0.26 +0.7 3,751,660 + RR42_RS17325 0.27 -0.3 3,751,660 + RR42_RS17325 0.27 -1.0 3,751,660 + RR42_RS17325 0.27 +0.2 3,751,661 - RR42_RS17325 0.28 +0.1 3,751,661 - RR42_RS17325 0.28 -1.0 3,751,661 - RR42_RS17325 0.28 -0.8 3,751,661 - RR42_RS17325 0.28 -0.1 3,751,729 + RR42_RS17325 0.37 -0.6 3,752,018 - RR42_RS17325 0.77 -1.2 3,752,273 + RR42_RS17330 0.13 -1.1 3,752,273 + RR42_RS17330 0.13 +0.2 3,752,274 - RR42_RS17330 0.13 -0.8 3,752,326 + RR42_RS17330 0.26 +0.6 3,752,385 + RR42_RS17330 0.40 -0.2 3,752,385 + RR42_RS17330 0.40 +1.5 3,752,386 - RR42_RS17330 0.40 +0.0 3,752,386 - RR42_RS17330 0.40 -0.8 3,752,464 + RR42_RS17330 0.60 -0.8 3,752,465 - RR42_RS17330 0.60 +2.7
Or see this region's nucleotide sequence