Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17270

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17265 and RR42_RS17270 are separated by 351 nucleotidesRR42_RS17270 and RR42_RS17275 are separated by 175 nucleotides RR42_RS17265: RR42_RS17265 - aminodeoxychorismate synthase, at 3,736,384 to 3,738,147 _RS17265 RR42_RS17270: RR42_RS17270 - molecular chaperone DnaJ, at 3,738,499 to 3,739,650 _RS17270 RR42_RS17275: RR42_RS17275 - molecular chaperone DnaK, at 3,739,826 to 3,741,790 _RS17275 Position (kb) 3738 3739 3740Strain fitness (log2 ratio) -1 0 1at 3737.714 kb on + strand, within RR42_RS17265at 3737.747 kb on + strand, within RR42_RS17265at 3737.747 kb on + strand, within RR42_RS17265at 3737.748 kb on - strand, within RR42_RS17265at 3737.748 kb on - strand, within RR42_RS17265at 3737.748 kb on - strand, within RR42_RS17265at 3737.807 kb on + strand, within RR42_RS17265at 3737.807 kb on + strand, within RR42_RS17265at 3737.808 kb on - strand, within RR42_RS17265at 3737.808 kb on - strand, within RR42_RS17265at 3737.808 kb on - strand, within RR42_RS17265at 3738.057 kb on - strandat 3738.292 kb on + strandat 3738.292 kb on + strandat 3738.292 kb on + strandat 3738.292 kb on + strandat 3738.293 kb on - strandat 3738.329 kb on - strandat 3738.329 kb on - strandat 3739.828 kb on - strandat 3739.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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3,737,714 + RR42_RS17265 0.75 -0.5
3,737,747 + RR42_RS17265 0.77 -0.7
3,737,747 + RR42_RS17265 0.77 +0.2
3,737,748 - RR42_RS17265 0.77 -0.3
3,737,748 - RR42_RS17265 0.77 -0.1
3,737,748 - RR42_RS17265 0.77 +1.1
3,737,807 + RR42_RS17265 0.81 -0.1
3,737,807 + RR42_RS17265 0.81 -1.3
3,737,808 - RR42_RS17265 0.81 +0.1
3,737,808 - RR42_RS17265 0.81 +0.1
3,737,808 - RR42_RS17265 0.81 -0.4
3,738,057 - +1.3
3,738,292 + +0.6
3,738,292 + -0.0
3,738,292 + -0.3
3,738,292 + +0.2
3,738,293 - -1.4
3,738,329 - +0.2
3,738,329 - -1.1
3,739,828 - +0.1
3,739,828 - -0.3

Or see this region's nucleotide sequence