Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17160

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17150 and RR42_RS17155 are separated by 51 nucleotidesRR42_RS17155 and RR42_RS17160 are separated by 140 nucleotidesRR42_RS17160 and RR42_RS17165 are separated by 19 nucleotidesRR42_RS17165 and RR42_RS17170 are separated by 117 nucleotides RR42_RS17150: RR42_RS17150 - hypothetical protein, at 3,714,445 to 3,714,894 _RS17150 RR42_RS17155: RR42_RS17155 - nucleotide-binding protein, at 3,714,946 to 3,715,431 _RS17155 RR42_RS17160: RR42_RS17160 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,715,572 to 3,716,588 _RS17160 RR42_RS17165: RR42_RS17165 - hypothetical protein, at 3,716,608 to 3,716,919 _RS17165 RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266 _RS17170 Position (kb) 3715 3716 3717Strain fitness (log2 ratio) -1 0 1 2at 3714.616 kb on + strand, within RR42_RS17150at 3714.751 kb on - strand, within RR42_RS17150at 3714.803 kb on + strand, within RR42_RS17150at 3714.809 kb on - strand, within RR42_RS17150at 3715.197 kb on - strand, within RR42_RS17155at 3715.414 kb on + strandat 3715.415 kb on - strandat 3715.415 kb on - strandat 3715.415 kb on - strandat 3715.462 kb on + strandat 3715.462 kb on + strandat 3715.462 kb on + strandat 3715.502 kb on + strandat 3715.502 kb on + strandat 3715.502 kb on + strandat 3715.503 kb on - strandat 3715.506 kb on + strandat 3715.506 kb on + strandat 3715.506 kb on + strandat 3715.506 kb on + strandat 3715.506 kb on + strandat 3715.506 kb on + strandat 3715.507 kb on - strandat 3715.507 kb on - strandat 3715.507 kb on - strandat 3715.508 kb on + strandat 3716.586 kb on + strandat 3716.587 kb on - strandat 3716.627 kb on + strandat 3716.699 kb on + strand, within RR42_RS17165at 3716.699 kb on + strand, within RR42_RS17165at 3716.699 kb on + strand, within RR42_RS17165at 3716.700 kb on - strand, within RR42_RS17165at 3716.899 kb on + strandat 3716.900 kb on - strandat 3716.900 kb on - strandat 3716.900 kb on - strandat 3716.922 kb on + strandat 3716.922 kb on + strandat 3716.922 kb on + strandat 3716.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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3,714,616 + RR42_RS17150 0.38 +0.4
3,714,751 - RR42_RS17150 0.68 -0.4
3,714,803 + RR42_RS17150 0.80 -0.4
3,714,809 - RR42_RS17150 0.81 +0.7
3,715,197 - RR42_RS17155 0.52 +1.2
3,715,414 + +1.0
3,715,415 - -1.1
3,715,415 - +0.1
3,715,415 - +0.4
3,715,462 + -1.4
3,715,462 + -0.5
3,715,462 + -0.8
3,715,502 + -1.0
3,715,502 + -0.9
3,715,502 + +0.7
3,715,503 - -1.1
3,715,506 + +0.2
3,715,506 + -0.4
3,715,506 + +0.0
3,715,506 + +2.6
3,715,506 + +0.2
3,715,506 + -0.1
3,715,507 - -0.2
3,715,507 - +0.4
3,715,507 - -0.3
3,715,508 + -0.3
3,716,586 + +0.4
3,716,587 - +0.2
3,716,627 + +1.3
3,716,699 + RR42_RS17165 0.29 -1.4
3,716,699 + RR42_RS17165 0.29 -0.1
3,716,699 + RR42_RS17165 0.29 -0.1
3,716,700 - RR42_RS17165 0.29 -0.2
3,716,899 + -1.6
3,716,900 - -1.5
3,716,900 - +0.3
3,716,900 - -1.1
3,716,922 + -0.1
3,716,922 + -0.9
3,716,922 + +0.8
3,716,922 + +0.0

Or see this region's nucleotide sequence