Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17150 and RR42_RS17155 are separated by 51 nucleotides RR42_RS17155 and RR42_RS17160 are separated by 140 nucleotides RR42_RS17160 and RR42_RS17165 are separated by 19 nucleotides RR42_RS17165 and RR42_RS17170 are separated by 117 nucleotides
RR42_RS17150: RR42_RS17150 - hypothetical protein, at 3,714,445 to 3,714,894
_RS17150
RR42_RS17155: RR42_RS17155 - nucleotide-binding protein, at 3,714,946 to 3,715,431
_RS17155
RR42_RS17160: RR42_RS17160 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 3,715,572 to 3,716,588
_RS17160
RR42_RS17165: RR42_RS17165 - hypothetical protein, at 3,716,608 to 3,716,919
_RS17165
RR42_RS17170: RR42_RS17170 - argininosuccinate synthase, at 3,717,037 to 3,718,266
_RS17170
Position (kb)
3715
3716
3717 Strain fitness (log2 ratio)
-1
0
1
2 at 3714.616 kb on + strand, within RR42_RS17150 at 3714.751 kb on - strand, within RR42_RS17150 at 3714.803 kb on + strand, within RR42_RS17150 at 3714.809 kb on - strand, within RR42_RS17150 at 3715.197 kb on - strand, within RR42_RS17155 at 3715.414 kb on + strand at 3715.415 kb on - strand at 3715.415 kb on - strand at 3715.415 kb on - strand at 3715.462 kb on + strand at 3715.462 kb on + strand at 3715.462 kb on + strand at 3715.502 kb on + strand at 3715.502 kb on + strand at 3715.502 kb on + strand at 3715.503 kb on - strand at 3715.506 kb on + strand at 3715.506 kb on + strand at 3715.506 kb on + strand at 3715.506 kb on + strand at 3715.506 kb on + strand at 3715.506 kb on + strand at 3715.507 kb on - strand at 3715.507 kb on - strand at 3715.507 kb on - strand at 3715.508 kb on + strand at 3716.586 kb on + strand at 3716.587 kb on - strand at 3716.627 kb on + strand at 3716.699 kb on + strand, within RR42_RS17165 at 3716.699 kb on + strand, within RR42_RS17165 at 3716.699 kb on + strand, within RR42_RS17165 at 3716.700 kb on - strand, within RR42_RS17165 at 3716.899 kb on + strand at 3716.900 kb on - strand at 3716.900 kb on - strand at 3716.900 kb on - strand at 3716.922 kb on + strand at 3716.922 kb on + strand at 3716.922 kb on + strand at 3716.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 3,714,616 + RR42_RS17150 0.38 +0.4 3,714,751 - RR42_RS17150 0.68 -0.4 3,714,803 + RR42_RS17150 0.80 -0.4 3,714,809 - RR42_RS17150 0.81 +0.7 3,715,197 - RR42_RS17155 0.52 +1.2 3,715,414 + +1.0 3,715,415 - -1.1 3,715,415 - +0.1 3,715,415 - +0.4 3,715,462 + -1.4 3,715,462 + -0.5 3,715,462 + -0.8 3,715,502 + -1.0 3,715,502 + -0.9 3,715,502 + +0.7 3,715,503 - -1.1 3,715,506 + +0.2 3,715,506 + -0.4 3,715,506 + +0.0 3,715,506 + +2.6 3,715,506 + +0.2 3,715,506 + -0.1 3,715,507 - -0.2 3,715,507 - +0.4 3,715,507 - -0.3 3,715,508 + -0.3 3,716,586 + +0.4 3,716,587 - +0.2 3,716,627 + +1.3 3,716,699 + RR42_RS17165 0.29 -1.4 3,716,699 + RR42_RS17165 0.29 -0.1 3,716,699 + RR42_RS17165 0.29 -0.1 3,716,700 - RR42_RS17165 0.29 -0.2 3,716,899 + -1.6 3,716,900 - -1.5 3,716,900 - +0.3 3,716,900 - -1.1 3,716,922 + -0.1 3,716,922 + -0.9 3,716,922 + +0.8 3,716,922 + +0.0
Or see this region's nucleotide sequence