Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08325 and RR42_RS08330 overlap by 4 nucleotides RR42_RS08330 and RR42_RS08335 are separated by 87 nucleotides RR42_RS08335 and RR42_RS08340 are separated by 10 nucleotides RR42_RS08340 and RR42_RS08345 are separated by 3 nucleotides
RR42_RS08325: RR42_RS08325 - hypothetical protein, at 1,762,563 to 1,763,687
_RS08325
RR42_RS08330: RR42_RS08330 - hypothetical protein, at 1,763,684 to 1,764,112
_RS08330
RR42_RS08335: RR42_RS08335 - hypothetical protein, at 1,764,200 to 1,765,069
_RS08335
RR42_RS08340: RR42_RS08340 - phage tail protein, at 1,765,080 to 1,765,481
_RS08340
RR42_RS08345: RR42_RS08345 - baseplate protein, at 1,765,485 to 1,766,609
_RS08345
Position (kb) 1764
1765
1766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1763.317 kb on - strand, within RR42_RS08325 at 1763.464 kb on - strand, within RR42_RS08325 at 1763.464 kb on - strand, within RR42_RS08325 at 1763.583 kb on + strand at 1763.584 kb on - strand at 1763.584 kb on - strand at 1763.584 kb on - strand at 1763.584 kb on - strand at 1763.683 kb on + strand at 1763.684 kb on - strand at 1763.783 kb on + strand, within RR42_RS08330 at 1764.139 kb on + strand at 1764.208 kb on - strand at 1764.527 kb on + strand, within RR42_RS08335 at 1764.527 kb on + strand, within RR42_RS08335 at 1764.620 kb on - strand, within RR42_RS08335 at 1764.659 kb on + strand, within RR42_RS08335 at 1764.660 kb on - strand, within RR42_RS08335 at 1764.660 kb on - strand, within RR42_RS08335 at 1764.707 kb on - strand, within RR42_RS08335 at 1764.920 kb on + strand, within RR42_RS08335 at 1764.921 kb on - strand, within RR42_RS08335 at 1764.929 kb on + strand, within RR42_RS08335 at 1764.930 kb on - strand, within RR42_RS08335 at 1764.965 kb on + strand, within RR42_RS08335 at 1764.965 kb on + strand, within RR42_RS08335 at 1764.966 kb on - strand, within RR42_RS08335 at 1765.092 kb on + strand at 1765.099 kb on - strand at 1765.101 kb on + strand at 1765.101 kb on + strand at 1765.101 kb on + strand at 1765.102 kb on - strand at 1765.263 kb on + strand, within RR42_RS08340 at 1765.470 kb on - strand at 1765.741 kb on + strand, within RR42_RS08345 at 1765.774 kb on - strand, within RR42_RS08345 at 1765.876 kb on - strand, within RR42_RS08345 at 1766.020 kb on - strand, within RR42_RS08345
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 1,763,317 - RR42_RS08325 0.67 +0.4 1,763,464 - RR42_RS08325 0.80 -0.0 1,763,464 - RR42_RS08325 0.80 -1.1 1,763,583 + -0.6 1,763,584 - +0.9 1,763,584 - -0.6 1,763,584 - +0.8 1,763,584 - -0.7 1,763,683 + -0.8 1,763,684 - -0.1 1,763,783 + RR42_RS08330 0.23 -0.3 1,764,139 + -0.5 1,764,208 - -0.5 1,764,527 + RR42_RS08335 0.38 -0.3 1,764,527 + RR42_RS08335 0.38 -0.3 1,764,620 - RR42_RS08335 0.48 -0.0 1,764,659 + RR42_RS08335 0.53 -0.6 1,764,660 - RR42_RS08335 0.53 -1.9 1,764,660 - RR42_RS08335 0.53 -3.0 1,764,707 - RR42_RS08335 0.58 -2.2 1,764,920 + RR42_RS08335 0.83 -0.3 1,764,921 - RR42_RS08335 0.83 -2.2 1,764,929 + RR42_RS08335 0.84 -0.7 1,764,930 - RR42_RS08335 0.84 -1.1 1,764,965 + RR42_RS08335 0.88 +1.8 1,764,965 + RR42_RS08335 0.88 -0.0 1,764,966 - RR42_RS08335 0.88 -1.0 1,765,092 + -2.4 1,765,099 - +0.4 1,765,101 + -0.6 1,765,101 + -0.3 1,765,101 + -0.4 1,765,102 - -0.0 1,765,263 + RR42_RS08340 0.46 -0.5 1,765,470 - -0.2 1,765,741 + RR42_RS08345 0.23 +0.0 1,765,774 - RR42_RS08345 0.26 +0.3 1,765,876 - RR42_RS08345 0.35 -2.1 1,766,020 - RR42_RS08345 0.48 -1.9
Or see this region's nucleotide sequence