Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08315 and RR42_RS08320 are separated by 4 nucleotides RR42_RS08320 and RR42_RS08325 are separated by 6 nucleotides
RR42_RS08315: RR42_RS08315 - hypothetical protein, at 1,759,652 to 1,761,589
_RS08315
RR42_RS08320: RR42_RS08320 - hypothetical protein, at 1,761,594 to 1,762,556
_RS08320
RR42_RS08325: RR42_RS08325 - hypothetical protein, at 1,762,563 to 1,763,687
_RS08325
Position (kb)
1761
1762
1763 Strain fitness (log2 ratio)
-1
0
1 at 1760.676 kb on - strand, within RR42_RS08315 at 1760.831 kb on + strand, within RR42_RS08315 at 1760.889 kb on + strand, within RR42_RS08315 at 1760.891 kb on + strand, within RR42_RS08315 at 1761.318 kb on + strand, within RR42_RS08315 at 1761.318 kb on + strand, within RR42_RS08315 at 1761.318 kb on + strand, within RR42_RS08315 at 1761.319 kb on - strand, within RR42_RS08315 at 1761.507 kb on - strand at 1761.599 kb on + strand at 1761.676 kb on + strand at 1761.676 kb on + strand at 1761.862 kb on - strand, within RR42_RS08320 at 1762.098 kb on - strand, within RR42_RS08320 at 1762.148 kb on + strand, within RR42_RS08320 at 1762.671 kb on + strand at 1763.035 kb on - strand, within RR42_RS08325 at 1763.037 kb on + strand, within RR42_RS08325 at 1763.145 kb on + strand, within RR42_RS08325 at 1763.146 kb on - strand, within RR42_RS08325 at 1763.196 kb on + strand, within RR42_RS08325 at 1763.196 kb on + strand, within RR42_RS08325 at 1763.317 kb on - strand, within RR42_RS08325 at 1763.464 kb on - strand, within RR42_RS08325 at 1763.464 kb on - strand, within RR42_RS08325
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 1,760,676 - RR42_RS08315 0.53 +0.2 1,760,831 + RR42_RS08315 0.61 -0.5 1,760,889 + RR42_RS08315 0.64 +0.1 1,760,891 + RR42_RS08315 0.64 -0.3 1,761,318 + RR42_RS08315 0.86 -0.3 1,761,318 + RR42_RS08315 0.86 +0.1 1,761,318 + RR42_RS08315 0.86 -1.3 1,761,319 - RR42_RS08315 0.86 -0.4 1,761,507 - +0.6 1,761,599 + +0.2 1,761,676 + -0.0 1,761,676 + +0.1 1,761,862 - RR42_RS08320 0.28 +0.7 1,762,098 - RR42_RS08320 0.52 -0.5 1,762,148 + RR42_RS08320 0.58 -1.7 1,762,671 + -0.3 1,763,035 - RR42_RS08325 0.42 +1.5 1,763,037 + RR42_RS08325 0.42 -0.9 1,763,145 + RR42_RS08325 0.52 +0.4 1,763,146 - RR42_RS08325 0.52 -0.7 1,763,196 + RR42_RS08325 0.56 -1.0 1,763,196 + RR42_RS08325 0.56 +0.1 1,763,317 - RR42_RS08325 0.67 +0.4 1,763,464 - RR42_RS08325 0.80 -0.0 1,763,464 - RR42_RS08325 0.80 -1.1
Or see this region's nucleotide sequence