Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23585

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23580 and RR42_RS23585 are separated by 161 nucleotidesRR42_RS23585 and RR42_RS23590 are separated by 8 nucleotides RR42_RS23580: RR42_RS23580 - hypothetical protein, at 616,408 to 617,061 _RS23580 RR42_RS23585: RR42_RS23585 - hypothetical protein, at 617,223 to 617,873 _RS23585 RR42_RS23590: RR42_RS23590 - FkbM family methyltransferase, at 617,882 to 618,952 _RS23590 Position (kb) 617 618Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 616.255 kb on + strandat 616.255 kb on + strandat 616.256 kb on - strandat 616.410 kb on - strandat 616.410 kb on - strandat 616.422 kb on - strandat 616.482 kb on - strand, within RR42_RS23580at 616.586 kb on + strand, within RR42_RS23580at 616.636 kb on + strand, within RR42_RS23580at 616.664 kb on + strand, within RR42_RS23580at 616.664 kb on + strand, within RR42_RS23580at 616.665 kb on - strand, within RR42_RS23580at 616.674 kb on - strand, within RR42_RS23580at 616.742 kb on + strand, within RR42_RS23580at 616.742 kb on + strand, within RR42_RS23580at 616.838 kb on + strand, within RR42_RS23580at 616.838 kb on + strand, within RR42_RS23580at 616.838 kb on + strand, within RR42_RS23580at 616.839 kb on - strand, within RR42_RS23580at 616.839 kb on - strand, within RR42_RS23580at 616.841 kb on + strand, within RR42_RS23580at 616.841 kb on + strand, within RR42_RS23580at 616.841 kb on + strand, within RR42_RS23580at 616.847 kb on + strand, within RR42_RS23580at 616.847 kb on + strand, within RR42_RS23580at 616.848 kb on - strand, within RR42_RS23580at 616.848 kb on - strand, within RR42_RS23580at 616.848 kb on - strand, within RR42_RS23580at 616.848 kb on - strand, within RR42_RS23580at 616.856 kb on + strand, within RR42_RS23580at 616.903 kb on + strand, within RR42_RS23580at 616.903 kb on + strand, within RR42_RS23580at 617.022 kb on - strandat 617.116 kb on - strandat 617.326 kb on + strand, within RR42_RS23585at 617.326 kb on + strand, within RR42_RS23585at 617.327 kb on - strand, within RR42_RS23585at 617.327 kb on - strand, within RR42_RS23585at 617.327 kb on - strand, within RR42_RS23585at 617.515 kb on + strand, within RR42_RS23585at 617.590 kb on + strand, within RR42_RS23585at 617.591 kb on - strandat 617.722 kb on + strand, within RR42_RS23585at 617.722 kb on + strand, within RR42_RS23585at 617.723 kb on - strand, within RR42_RS23585at 617.723 kb on - strand, within RR42_RS23585at 617.853 kb on - strandat 618.027 kb on + strand, within RR42_RS23590at 618.075 kb on - strand, within RR42_RS23590at 618.075 kb on - strand, within RR42_RS23590at 618.175 kb on - strand, within RR42_RS23590at 618.175 kb on - strand, within RR42_RS23590at 618.322 kb on - strand, within RR42_RS23590at 618.591 kb on + strand, within RR42_RS23590at 618.592 kb on - strand, within RR42_RS23590at 618.592 kb on - strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.666 kb on - strand, within RR42_RS23590at 618.666 kb on - strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.784 kb on - strand, within RR42_RS23590at 618.784 kb on - strand, within RR42_RS23590

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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616,255 + -0.6
616,255 + -0.7
616,256 - -0.6
616,410 - -0.4
616,410 - +0.3
616,422 - +0.0
616,482 - RR42_RS23580 0.11 +0.5
616,586 + RR42_RS23580 0.27 -0.3
616,636 + RR42_RS23580 0.35 -1.3
616,664 + RR42_RS23580 0.39 -2.1
616,664 + RR42_RS23580 0.39 +0.3
616,665 - RR42_RS23580 0.39 +0.2
616,674 - RR42_RS23580 0.41 -0.4
616,742 + RR42_RS23580 0.51 +0.4
616,742 + RR42_RS23580 0.51 +0.3
616,838 + RR42_RS23580 0.66 +1.5
616,838 + RR42_RS23580 0.66 -0.2
616,838 + RR42_RS23580 0.66 -0.9
616,839 - RR42_RS23580 0.66 -0.4
616,839 - RR42_RS23580 0.66 +2.1
616,841 + RR42_RS23580 0.66 +0.1
616,841 + RR42_RS23580 0.66 -2.4
616,841 + RR42_RS23580 0.66 -0.3
616,847 + RR42_RS23580 0.67 +0.5
616,847 + RR42_RS23580 0.67 +1.6
616,848 - RR42_RS23580 0.67 -0.2
616,848 - RR42_RS23580 0.67 -0.3
616,848 - RR42_RS23580 0.67 -0.8
616,848 - RR42_RS23580 0.67 -0.7
616,856 + RR42_RS23580 0.69 -0.5
616,903 + RR42_RS23580 0.76 -0.2
616,903 + RR42_RS23580 0.76 -0.2
617,022 - -0.2
617,116 - +0.7
617,326 + RR42_RS23585 0.16 +0.3
617,326 + RR42_RS23585 0.16 +0.5
617,327 - RR42_RS23585 0.16 +0.4
617,327 - RR42_RS23585 0.16 -0.7
617,327 - RR42_RS23585 0.16 +1.1
617,515 + RR42_RS23585 0.45 +1.0
617,590 + RR42_RS23585 0.56 -0.2
617,591 - -0.6
617,722 + RR42_RS23585 0.77 +0.9
617,722 + RR42_RS23585 0.77 +0.6
617,723 - RR42_RS23585 0.77 +0.3
617,723 - RR42_RS23585 0.77 +0.3
617,853 - +0.2
618,027 + RR42_RS23590 0.14 +0.1
618,075 - RR42_RS23590 0.18 -2.2
618,075 - RR42_RS23590 0.18 +1.5
618,175 - RR42_RS23590 0.27 -1.1
618,175 - RR42_RS23590 0.27 +0.6
618,322 - RR42_RS23590 0.41 +0.2
618,591 + RR42_RS23590 0.66 +0.0
618,592 - RR42_RS23590 0.66 -0.7
618,592 - RR42_RS23590 0.66 -1.1
618,665 + RR42_RS23590 0.73 -0.4
618,665 + RR42_RS23590 0.73 -3.3
618,665 + RR42_RS23590 0.73 +0.6
618,665 + RR42_RS23590 0.73 -0.2
618,666 - RR42_RS23590 0.73 +1.6
618,666 - RR42_RS23590 0.73 -0.4
618,783 + RR42_RS23590 0.84 +0.7
618,783 + RR42_RS23590 0.84 -0.5
618,783 + RR42_RS23590 0.84 +0.4
618,784 - RR42_RS23590 0.84 +1.2
618,784 - RR42_RS23590 0.84 -0.7

Or see this region's nucleotide sequence