Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS18365 and RR42_RS18370 are separated by 222 nucleotides RR42_RS18370 and RR42_RS18375 are separated by 92 nucleotides
RR42_RS18365: RR42_RS18365 - GTP-binding protein, at 3,980,507 to 3,981,598
_RS18365
RR42_RS18370: RR42_RS18370 - integrase, at 3,981,821 to 3,983,089
_RS18370
RR42_RS18375: RR42_RS18375 - hypothetical protein, at 3,983,182 to 3,983,895
_RS18375
Position (kb)
3981
3982
3983
3984 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3981.117 kb on - strand, within RR42_RS18365 at 3981.117 kb on - strand, within RR42_RS18365 at 3981.350 kb on + strand, within RR42_RS18365 at 3981.351 kb on - strand, within RR42_RS18365 at 3981.476 kb on + strand, within RR42_RS18365 at 3981.490 kb on + strand at 3981.490 kb on + strand at 3981.491 kb on - strand at 3981.491 kb on - strand at 3981.494 kb on + strand at 3981.495 kb on - strand at 3981.495 kb on - strand at 3981.495 kb on - strand at 3981.552 kb on - strand at 3981.552 kb on - strand at 3981.661 kb on + strand at 3981.685 kb on + strand at 3981.686 kb on - strand at 3981.734 kb on + strand at 3981.870 kb on - strand at 3981.870 kb on - strand at 3981.896 kb on + strand at 3981.897 kb on - strand at 3981.961 kb on + strand, within RR42_RS18370 at 3981.961 kb on + strand, within RR42_RS18370 at 3981.961 kb on + strand, within RR42_RS18370 at 3981.961 kb on + strand, within RR42_RS18370 at 3981.962 kb on - strand, within RR42_RS18370 at 3981.962 kb on - strand, within RR42_RS18370 at 3981.978 kb on + strand, within RR42_RS18370 at 3981.979 kb on - strand, within RR42_RS18370 at 3981.979 kb on - strand, within RR42_RS18370 at 3982.061 kb on - strand, within RR42_RS18370 at 3982.061 kb on - strand, within RR42_RS18370 at 3982.212 kb on + strand, within RR42_RS18370 at 3982.231 kb on + strand, within RR42_RS18370 at 3982.231 kb on + strand, within RR42_RS18370 at 3982.232 kb on - strand, within RR42_RS18370 at 3982.232 kb on - strand, within RR42_RS18370 at 3982.257 kb on + strand, within RR42_RS18370 at 3982.258 kb on - strand, within RR42_RS18370 at 3982.258 kb on - strand, within RR42_RS18370 at 3982.258 kb on - strand, within RR42_RS18370 at 3982.329 kb on + strand, within RR42_RS18370 at 3982.329 kb on + strand, within RR42_RS18370 at 3982.330 kb on - strand, within RR42_RS18370 at 3982.541 kb on + strand, within RR42_RS18370 at 3982.542 kb on - strand, within RR42_RS18370 at 3982.743 kb on - strand, within RR42_RS18370 at 3982.835 kb on + strand, within RR42_RS18370 at 3982.836 kb on - strand, within RR42_RS18370 at 3982.836 kb on - strand, within RR42_RS18370 at 3982.836 kb on - strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.839 kb on + strand, within RR42_RS18370 at 3982.840 kb on - strand, within RR42_RS18370 at 3982.840 kb on - strand, within RR42_RS18370 at 3982.840 kb on - strand, within RR42_RS18370 at 3982.840 kb on - strand at 3982.856 kb on + strand, within RR42_RS18370 at 3982.856 kb on + strand, within RR42_RS18370 at 3982.856 kb on + strand, within RR42_RS18370 at 3982.973 kb on + strand at 3982.973 kb on + strand at 3982.974 kb on - strand at 3982.992 kb on + strand at 3983.107 kb on + strand at 3983.107 kb on + strand at 3983.107 kb on + strand at 3983.108 kb on - strand at 3983.137 kb on - strand at 3983.162 kb on + strand at 3983.162 kb on + strand at 3983.162 kb on + strand at 3983.163 kb on - strand at 3983.163 kb on - strand at 3983.163 kb on - strand at 3983.313 kb on - strand, within RR42_RS18375 at 3983.438 kb on + strand, within RR42_RS18375 at 3983.438 kb on + strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.439 kb on - strand, within RR42_RS18375 at 3983.471 kb on + strand, within RR42_RS18375 at 3983.472 kb on - strand, within RR42_RS18375 at 3983.614 kb on + strand, within RR42_RS18375 at 3983.618 kb on + strand, within RR42_RS18375 at 3983.618 kb on + strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.619 kb on - strand, within RR42_RS18375 at 3983.679 kb on + strand, within RR42_RS18375 at 3983.680 kb on - strand, within RR42_RS18375 at 3983.680 kb on - strand, within RR42_RS18375 at 3983.749 kb on + strand, within RR42_RS18375 at 3983.749 kb on + strand, within RR42_RS18375 at 3983.749 kb on + strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.750 kb on - strand, within RR42_RS18375 at 3983.797 kb on + strand, within RR42_RS18375 at 3983.858 kb on + strand at 3983.858 kb on + strand at 3983.859 kb on - strand at 3983.952 kb on - strand at 3984.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 3,981,117 - RR42_RS18365 0.56 +0.3 3,981,117 - RR42_RS18365 0.56 -1.0 3,981,350 + RR42_RS18365 0.77 -0.7 3,981,351 - RR42_RS18365 0.77 -0.5 3,981,476 + RR42_RS18365 0.89 +0.1 3,981,490 + -0.5 3,981,490 + -0.3 3,981,491 - -0.9 3,981,491 - -0.6 3,981,494 + +2.7 3,981,495 - -0.3 3,981,495 - +0.7 3,981,495 - -0.7 3,981,552 - +0.7 3,981,552 - +0.1 3,981,661 + +2.4 3,981,685 + -0.0 3,981,686 - -0.2 3,981,734 + -2.4 3,981,870 - +0.5 3,981,870 - -0.3 3,981,896 + +0.1 3,981,897 - -0.9 3,981,961 + RR42_RS18370 0.11 +1.7 3,981,961 + RR42_RS18370 0.11 -0.0 3,981,961 + RR42_RS18370 0.11 -0.3 3,981,961 + RR42_RS18370 0.11 +1.2 3,981,962 - RR42_RS18370 0.11 +1.7 3,981,962 - RR42_RS18370 0.11 -0.7 3,981,978 + RR42_RS18370 0.12 -0.7 3,981,979 - RR42_RS18370 0.12 -0.3 3,981,979 - RR42_RS18370 0.12 -1.0 3,982,061 - RR42_RS18370 0.19 +0.0 3,982,061 - RR42_RS18370 0.19 +0.1 3,982,212 + RR42_RS18370 0.31 +0.3 3,982,231 + RR42_RS18370 0.32 -0.1 3,982,231 + RR42_RS18370 0.32 -0.3 3,982,232 - RR42_RS18370 0.32 +0.7 3,982,232 - RR42_RS18370 0.32 -1.6 3,982,257 + RR42_RS18370 0.34 -1.9 3,982,258 - RR42_RS18370 0.34 +1.0 3,982,258 - RR42_RS18370 0.34 +0.0 3,982,258 - RR42_RS18370 0.34 -0.3 3,982,329 + RR42_RS18370 0.40 -0.2 3,982,329 + RR42_RS18370 0.40 +1.1 3,982,330 - RR42_RS18370 0.40 +0.1 3,982,541 + RR42_RS18370 0.57 -0.9 3,982,542 - RR42_RS18370 0.57 -0.2 3,982,743 - RR42_RS18370 0.73 -0.3 3,982,835 + RR42_RS18370 0.80 -0.4 3,982,836 - RR42_RS18370 0.80 +0.4 3,982,836 - RR42_RS18370 0.80 -0.1 3,982,836 - RR42_RS18370 0.80 +0.4 3,982,839 + RR42_RS18370 0.80 -1.3 3,982,839 + RR42_RS18370 0.80 -0.5 3,982,839 + RR42_RS18370 0.80 -1.9 3,982,839 + RR42_RS18370 0.80 -0.7 3,982,839 + RR42_RS18370 0.80 +0.5 3,982,840 - RR42_RS18370 0.80 -1.1 3,982,840 - RR42_RS18370 0.80 +0.2 3,982,840 - RR42_RS18370 0.80 -2.7 3,982,840 - -0.9 3,982,856 + RR42_RS18370 0.82 +1.1 3,982,856 + RR42_RS18370 0.82 +0.7 3,982,856 + RR42_RS18370 0.82 -1.4 3,982,973 + -0.0 3,982,973 + -0.3 3,982,974 - -2.1 3,982,992 + -0.7 3,983,107 + +1.0 3,983,107 + +0.5 3,983,107 + -0.7 3,983,108 - -0.2 3,983,137 - -0.8 3,983,162 + -0.3 3,983,162 + +0.1 3,983,162 + +0.0 3,983,163 - -1.5 3,983,163 - -0.3 3,983,163 - +0.3 3,983,313 - RR42_RS18375 0.18 +0.1 3,983,438 + RR42_RS18375 0.36 +0.8 3,983,438 + RR42_RS18375 0.36 +0.0 3,983,439 - RR42_RS18375 0.36 +0.9 3,983,439 - RR42_RS18375 0.36 +2.0 3,983,439 - RR42_RS18375 0.36 -0.6 3,983,439 - RR42_RS18375 0.36 -0.7 3,983,439 - RR42_RS18375 0.36 +0.5 3,983,439 - RR42_RS18375 0.36 +0.4 3,983,471 + RR42_RS18375 0.40 -2.1 3,983,472 - RR42_RS18375 0.41 +1.0 3,983,614 + RR42_RS18375 0.61 -2.0 3,983,618 + RR42_RS18375 0.61 +0.3 3,983,618 + RR42_RS18375 0.61 +0.0 3,983,619 - RR42_RS18375 0.61 -0.6 3,983,619 - RR42_RS18375 0.61 +1.0 3,983,619 - RR42_RS18375 0.61 -1.2 3,983,619 - RR42_RS18375 0.61 +0.2 3,983,679 + RR42_RS18375 0.70 -1.1 3,983,680 - RR42_RS18375 0.70 +0.8 3,983,680 - RR42_RS18375 0.70 +0.2 3,983,749 + RR42_RS18375 0.79 +0.4 3,983,749 + RR42_RS18375 0.79 -0.4 3,983,749 + RR42_RS18375 0.79 +0.2 3,983,750 - RR42_RS18375 0.80 +0.2 3,983,750 - RR42_RS18375 0.80 +3.7 3,983,750 - RR42_RS18375 0.80 -0.6 3,983,750 - RR42_RS18375 0.80 -0.6 3,983,750 - RR42_RS18375 0.80 +0.9 3,983,750 - RR42_RS18375 0.80 -0.8 3,983,750 - RR42_RS18375 0.80 +0.3 3,983,797 + RR42_RS18375 0.86 -0.7 3,983,858 + +0.5 3,983,858 + +0.5 3,983,859 - -0.8 3,983,952 - -0.7 3,984,043 - -0.3
Or see this region's nucleotide sequence