Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06810 and RR42_RS06815 are separated by 204 nucleotides RR42_RS06815 and RR42_RS06820 overlap by 1 nucleotides RR42_RS06820 and RR42_RS06825 are separated by 224 nucleotides
RR42_RS06810: RR42_RS06810 - hypothetical protein, at 1,474,365 to 1,474,643
_RS06810
RR42_RS06815: RR42_RS06815 - hypothetical protein, at 1,474,848 to 1,475,423
_RS06815
RR42_RS06820: RR42_RS06820 - hypothetical protein, at 1,475,423 to 1,475,674
_RS06820
RR42_RS06825: RR42_RS06825 - hypothetical protein, at 1,475,899 to 1,476,567
_RS06825
Position (kb) 1475
1476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1474.518 kb on + strand, within RR42_RS06810 at 1474.628 kb on - strand at 1474.628 kb on - strand at 1474.660 kb on - strand at 1474.724 kb on - strand at 1474.733 kb on + strand at 1474.908 kb on + strand, within RR42_RS06815 at 1474.993 kb on - strand, within RR42_RS06815 at 1475.063 kb on + strand, within RR42_RS06815 at 1475.063 kb on + strand, within RR42_RS06815 at 1475.063 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.296 kb on + strand, within RR42_RS06815 at 1475.322 kb on + strand, within RR42_RS06815 at 1475.463 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.466 kb on + strand, within RR42_RS06820 at 1475.467 kb on - strand, within RR42_RS06820 at 1475.569 kb on - strand, within RR42_RS06820 at 1475.754 kb on + strand at 1475.755 kb on - strand at 1475.881 kb on - strand at 1475.898 kb on + strand at 1475.898 kb on + strand at 1475.899 kb on - strand at 1475.950 kb on + strand at 1475.982 kb on + strand, within RR42_RS06825 at 1475.983 kb on - strand, within RR42_RS06825 at 1475.983 kb on - strand, within RR42_RS06825 at 1476.045 kb on - strand, within RR42_RS06825 at 1476.045 kb on - strand, within RR42_RS06825 at 1476.054 kb on + strand, within RR42_RS06825 at 1476.103 kb on - strand, within RR42_RS06825 at 1476.103 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.230 kb on - strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.454 kb on + strand, within RR42_RS06825 at 1476.484 kb on - strand, within RR42_RS06825 at 1476.547 kb on + strand at 1476.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 1,474,518 + RR42_RS06810 0.55 -2.7 1,474,628 - -0.4 1,474,628 - -0.6 1,474,660 - +0.5 1,474,724 - +1.3 1,474,733 + -0.5 1,474,908 + RR42_RS06815 0.10 +1.3 1,474,993 - RR42_RS06815 0.25 -2.0 1,475,063 + RR42_RS06815 0.37 -0.6 1,475,063 + RR42_RS06815 0.37 +0.6 1,475,063 + RR42_RS06815 0.37 -0.0 1,475,296 + RR42_RS06815 0.78 +0.4 1,475,296 + RR42_RS06815 0.78 -1.3 1,475,296 + RR42_RS06815 0.78 +1.0 1,475,296 + RR42_RS06815 0.78 +0.9 1,475,296 + RR42_RS06815 0.78 -0.8 1,475,322 + RR42_RS06815 0.82 +0.5 1,475,463 + RR42_RS06820 0.16 -0.3 1,475,466 + RR42_RS06820 0.17 -0.9 1,475,466 + RR42_RS06820 0.17 -0.2 1,475,466 + RR42_RS06820 0.17 +0.6 1,475,466 + RR42_RS06820 0.17 -2.8 1,475,467 - RR42_RS06820 0.17 -0.2 1,475,569 - RR42_RS06820 0.58 -1.0 1,475,754 + +0.1 1,475,755 - +0.9 1,475,881 - -1.3 1,475,898 + +0.9 1,475,898 + +0.3 1,475,899 - -0.7 1,475,950 + -0.3 1,475,982 + RR42_RS06825 0.12 -0.6 1,475,983 - RR42_RS06825 0.13 +0.5 1,475,983 - RR42_RS06825 0.13 -1.1 1,476,045 - RR42_RS06825 0.22 -0.2 1,476,045 - RR42_RS06825 0.22 +0.6 1,476,054 + RR42_RS06825 0.23 +0.1 1,476,103 - RR42_RS06825 0.30 -0.3 1,476,103 - RR42_RS06825 0.30 -0.1 1,476,230 - RR42_RS06825 0.49 +1.7 1,476,230 - RR42_RS06825 0.49 +0.2 1,476,230 - RR42_RS06825 0.49 +1.5 1,476,230 - RR42_RS06825 0.49 +0.1 1,476,230 - RR42_RS06825 0.49 -0.8 1,476,454 + RR42_RS06825 0.83 -0.4 1,476,454 + RR42_RS06825 0.83 +0.5 1,476,454 + RR42_RS06825 0.83 +0.6 1,476,454 + RR42_RS06825 0.83 +2.9 1,476,484 - RR42_RS06825 0.87 +0.5 1,476,547 + -0.8 1,476,607 + -0.7
Or see this region's nucleotide sequence