Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03905

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03900 and RR42_RS03905 are separated by 124 nucleotidesRR42_RS03905 and RR42_RS03910 are separated by 169 nucleotidesRR42_RS03910 and RR42_RS03915 overlap by 4 nucleotides RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821 _RS03900 RR42_RS03905: RR42_RS03905 - hypothetical protein, at 860,946 to 861,863 _RS03905 RR42_RS03910: RR42_RS03910 - (2Fe-2S)-binding protein, at 862,033 to 862,506 _RS03910 RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788 _RS03915 Position (kb) 860 861 862Strain fitness (log2 ratio) -2 -1 0 1 2 3at 860.022 kb on + strand, within RR42_RS03900at 860.089 kb on + strand, within RR42_RS03900at 860.090 kb on - strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.184 kb on + strand, within RR42_RS03900at 860.299 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.464 kb on - strand, within RR42_RS03900at 860.583 kb on + strand, within RR42_RS03900at 860.677 kb on + strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.678 kb on - strand, within RR42_RS03900at 860.680 kb on - strand, within RR42_RS03900at 860.685 kb on + strand, within RR42_RS03900at 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.866 kb on + strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.867 kb on - strandat 860.868 kb on + strandat 860.869 kb on - strandat 860.870 kb on + strandat 860.871 kb on - strandat 860.947 kb on + strandat 860.947 kb on + strandat 860.948 kb on - strandat 860.954 kb on + strandat 860.954 kb on + strandat 860.954 kb on + strandat 860.955 kb on - strandat 860.955 kb on - strandat 860.988 kb on + strandat 860.988 kb on + strandat 861.064 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.281 kb on + strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.282 kb on - strand, within RR42_RS03905at 861.539 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.556 kb on + strand, within RR42_RS03905at 861.557 kb on - strand, within RR42_RS03905at 861.590 kb on - strand, within RR42_RS03905at 861.784 kb on - strandat 861.785 kb on + strandat 861.785 kb on + strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.786 kb on - strandat 861.889 kb on + strandat 862.441 kb on + strand, within RR42_RS03910at 862.442 kb on - strand, within RR42_RS03910at 862.442 kb on - strand, within RR42_RS03910at 862.523 kb on + strandat 862.524 kb on - strandat 862.737 kb on + strand, within RR42_RS03915at 862.738 kb on - strand, within RR42_RS03915at 862.814 kb on - strand, within RR42_RS03915at 862.814 kb on - strand, within RR42_RS03915

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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860,022 + RR42_RS03900 0.29 -0.4
860,089 + RR42_RS03900 0.35 -0.6
860,090 - RR42_RS03900 0.35 +0.5
860,184 + RR42_RS03900 0.43 +0.1
860,184 + RR42_RS03900 0.43 -0.7
860,299 - RR42_RS03900 0.54 -0.1
860,464 - RR42_RS03900 0.68 -0.9
860,464 - RR42_RS03900 0.68 +0.0
860,583 + RR42_RS03900 0.79 +0.7
860,677 + RR42_RS03900 0.87 -0.2
860,678 - RR42_RS03900 0.87 -0.5
860,678 - RR42_RS03900 0.87 +1.1
860,678 - RR42_RS03900 0.87 +0.5
860,680 - RR42_RS03900 0.87 +0.5
860,685 + RR42_RS03900 0.88 -0.7
860,866 + +1.0
860,866 + -0.4
860,866 + -1.7
860,866 + -0.4
860,866 + +0.4
860,866 + -1.6
860,866 + -1.7
860,866 + +0.5
860,866 + +0.3
860,866 + -1.0
860,867 - -1.3
860,867 - -1.1
860,867 - -1.0
860,867 - -1.6
860,867 - -0.7
860,867 - +0.3
860,867 - +0.3
860,867 - -0.8
860,868 + -0.6
860,869 - -1.8
860,870 + -2.2
860,871 - -0.2
860,947 + +0.9
860,947 + +0.6
860,948 - -0.3
860,954 + +3.1
860,954 + +0.3
860,954 + +0.6
860,955 - +1.0
860,955 - +0.3
860,988 + -1.0
860,988 + +1.3
861,064 + RR42_RS03905 0.13 +0.7
861,281 + RR42_RS03905 0.36 +1.5
861,281 + RR42_RS03905 0.36 +1.5
861,282 - RR42_RS03905 0.37 +2.1
861,282 - RR42_RS03905 0.37 -0.8
861,282 - RR42_RS03905 0.37 +0.5
861,539 + RR42_RS03905 0.65 +0.5
861,556 + RR42_RS03905 0.66 -2.3
861,556 + RR42_RS03905 0.66 +0.6
861,556 + RR42_RS03905 0.66 +0.1
861,556 + RR42_RS03905 0.66 -0.8
861,556 + RR42_RS03905 0.66 -0.2
861,557 - RR42_RS03905 0.67 +0.4
861,590 - RR42_RS03905 0.70 +2.1
861,784 - -0.5
861,785 + -0.4
861,785 + +0.0
861,786 - -1.8
861,786 - +0.5
861,786 - +0.9
861,786 - -0.7
861,786 - +0.1
861,786 - +0.2
861,786 - +1.9
861,786 - -0.7
861,889 + +0.7
862,441 + RR42_RS03910 0.86 -1.0
862,442 - RR42_RS03910 0.86 -0.9
862,442 - RR42_RS03910 0.86 -0.7
862,523 + -0.1
862,524 - +0.4
862,737 + RR42_RS03915 0.10 -2.4
862,738 - RR42_RS03915 0.10 -0.5
862,814 - RR42_RS03915 0.14 +0.3
862,814 - RR42_RS03915 0.14 -0.7

Or see this region's nucleotide sequence