Experiment: Valeric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03785 and RR42_RS03790 are separated by 410 nucleotides RR42_RS03790 and RR42_RS03795 are separated by 139 nucleotides RR42_RS03795 and RR42_RS03800 are separated by 22 nucleotides
RR42_RS03785: RR42_RS03785 - membrane protein, at 835,289 to 836,815
_RS03785
RR42_RS03790: RR42_RS03790 - molybdenum cofactor biosynthesis protein MoaA, at 837,226 to 837,480
_RS03790
RR42_RS03795: RR42_RS03795 - tyrosine protein phosphatase, at 837,620 to 838,336
_RS03795
RR42_RS03800: RR42_RS03800 - acetate kinase, at 838,359 to 839,585
_RS03800
Position (kb) 837
838 Strain fitness (log2 ratio) -1
0
1 at 836.502 kb on + strand, within RR42_RS03785 at 836.503 kb on - strand, within RR42_RS03785 at 836.700 kb on - strand at 836.716 kb on - strand at 836.993 kb on - strand at 836.993 kb on - strand at 837.037 kb on + strand at 837.128 kb on - strand at 837.128 kb on - strand at 837.128 kb on - strand at 837.237 kb on - strand at 837.295 kb on + strand, within RR42_RS03790 at 837.296 kb on - strand, within RR42_RS03790 at 837.427 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.429 kb on + strand, within RR42_RS03790 at 837.931 kb on + strand, within RR42_RS03795 at 837.932 kb on + strand, within RR42_RS03795 at 837.953 kb on + strand, within RR42_RS03795 at 837.953 kb on + strand, within RR42_RS03795 at 838.010 kb on + strand, within RR42_RS03795 at 838.103 kb on + strand, within RR42_RS03795 at 838.104 kb on - strand, within RR42_RS03795 at 838.319 kb on + strand at 838.360 kb on + strand at 838.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric (C) remove 836,502 + RR42_RS03785 0.79 -0.7 836,503 - RR42_RS03785 0.80 +0.8 836,700 - -0.1 836,716 - -0.3 836,993 - +0.9 836,993 - -0.3 837,037 + -0.4 837,128 - -0.0 837,128 - +0.2 837,128 - +0.4 837,237 - +0.6 837,295 + RR42_RS03790 0.27 -0.0 837,296 - RR42_RS03790 0.27 +0.2 837,427 + RR42_RS03790 0.79 -0.3 837,429 + RR42_RS03790 0.80 -0.3 837,429 + RR42_RS03790 0.80 -0.0 837,429 + RR42_RS03790 0.80 +1.3 837,429 + RR42_RS03790 0.80 +0.8 837,931 + RR42_RS03795 0.43 +0.6 837,932 + RR42_RS03795 0.44 -0.8 837,953 + RR42_RS03795 0.46 +1.3 837,953 + RR42_RS03795 0.46 +0.1 838,010 + RR42_RS03795 0.54 +1.1 838,103 + RR42_RS03795 0.67 -0.2 838,104 - RR42_RS03795 0.68 +0.5 838,319 + +0.3 838,360 + -0.4 838,361 - -0.5
Or see this region's nucleotide sequence