Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02675

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02670 and RR42_RS02675 are separated by 19 nucleotidesRR42_RS02675 and RR42_RS02680 are separated by 116 nucleotidesRR42_RS02680 and RR42_RS02685 are separated by 89 nucleotides RR42_RS02670: RR42_RS02670 - tyrosyl-tRNA synthetase, at 596,870 to 598,111 _RS02670 RR42_RS02675: RR42_RS02675 - D-tyrosyl-tRNA(Tyr) deacylase, at 598,131 to 598,631 _RS02675 RR42_RS02680: RR42_RS02680 - phospholipid-binding protein, at 598,748 to 599,407 _RS02680 RR42_RS02685: RR42_RS02685 - phosphoglycerate mutase, at 599,497 to 600,171 _RS02685 Position (kb) 598 599Strain fitness (log2 ratio) -2 -1 0 1 2at 598.461 kb on + strand, within RR42_RS02675at 598.462 kb on - strand, within RR42_RS02675at 598.462 kb on - strand, within RR42_RS02675at 598.462 kb on - strand, within RR42_RS02675at 598.613 kb on - strandat 598.659 kb on + strandat 598.659 kb on + strandat 598.660 kb on - strandat 599.018 kb on - strand, within RR42_RS02680at 599.018 kb on - strand, within RR42_RS02680at 599.147 kb on + strand, within RR42_RS02680at 599.189 kb on + strand, within RR42_RS02680at 599.190 kb on - strand, within RR42_RS02680at 599.190 kb on - strand, within RR42_RS02680at 599.190 kb on - strand, within RR42_RS02680at 599.193 kb on - strand, within RR42_RS02680at 599.243 kb on + strand, within RR42_RS02680at 599.243 kb on + strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.286 kb on + strand, within RR42_RS02680at 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.405 kb on + strandat 599.405 kb on + strandat 599.406 kb on - strandat 599.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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598,461 + RR42_RS02675 0.66 +0.3
598,462 - RR42_RS02675 0.66 +0.7
598,462 - RR42_RS02675 0.66 +1.0
598,462 - RR42_RS02675 0.66 -1.0
598,613 - -0.1
598,659 + -0.4
598,659 + -0.0
598,660 - -2.0
599,018 - RR42_RS02680 0.41 +0.4
599,018 - RR42_RS02680 0.41 -0.7
599,147 + RR42_RS02680 0.60 -0.0
599,189 + RR42_RS02680 0.67 -0.4
599,190 - RR42_RS02680 0.67 -0.1
599,190 - RR42_RS02680 0.67 +2.2
599,190 - RR42_RS02680 0.67 -2.7
599,193 - RR42_RS02680 0.67 +0.3
599,243 + RR42_RS02680 0.75 +0.1
599,243 + RR42_RS02680 0.75 -0.4
599,244 - RR42_RS02680 0.75 -0.0
599,244 - RR42_RS02680 0.75 +0.4
599,244 - RR42_RS02680 0.75 -1.3
599,286 + RR42_RS02680 0.82 -0.2
599,366 + -1.2
599,366 + +0.2
599,366 + +1.4
599,366 + +0.1
599,367 - +1.1
599,367 - -0.1
599,367 - +0.1
599,367 - -0.7
599,367 - -0.4
599,367 - -0.3
599,367 - +0.2
599,405 + -1.2
599,405 + -1.3
599,406 - -0.3
599,466 - -2.6

Or see this region's nucleotide sequence