Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01625

Experiment: Valeric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01615 and RR42_RS01620 are separated by 58 nucleotidesRR42_RS01620 and RR42_RS01625 are separated by 236 nucleotidesRR42_RS01625 and RR42_RS01630 overlap by 4 nucleotidesRR42_RS01630 and RR42_RS01635 are separated by 24 nucleotides RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011 _RS01615 RR42_RS01620: RR42_RS01620 - Crp/Fnr family transcriptional regulator, at 369,070 to 369,738 _RS01620 RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945 _RS01625 RR42_RS01630: RR42_RS01630 - branched-chain amino acid ABC transporter ATP-binding protein, at 371,942 to 372,865 _RS01630 RR42_RS01635: RR42_RS01635 - ABC transporter permease, at 372,890 to 373,804 _RS01635 Position (kb) 369 370 371 372Strain fitness (log2 ratio) -2 -1 0 1 2at 369.106 kb on + strandat 369.106 kb on + strandat 369.107 kb on - strandat 369.107 kb on - strandat 369.123 kb on - strandat 369.187 kb on + strand, within RR42_RS01620at 369.188 kb on - strand, within RR42_RS01620at 369.248 kb on + strand, within RR42_RS01620at 369.464 kb on + strand, within RR42_RS01620at 369.619 kb on - strand, within RR42_RS01620at 369.630 kb on - strand, within RR42_RS01620at 369.643 kb on - strand, within RR42_RS01620at 369.676 kb on - strandat 369.812 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.817 kb on + strandat 369.909 kb on + strandat 369.909 kb on + strandat 369.911 kb on + strandat 369.912 kb on - strandat 369.912 kb on - strandat 370.083 kb on + strandat 370.084 kb on - strandat 370.084 kb on - strandat 370.084 kb on - strandat 370.084 kb on - strandat 370.198 kb on - strand, within RR42_RS01625at 370.249 kb on - strand, within RR42_RS01625at 370.249 kb on - strand, within RR42_RS01625at 370.278 kb on + strand, within RR42_RS01625at 370.278 kb on + strand, within RR42_RS01625at 370.278 kb on + strand, within RR42_RS01625at 370.279 kb on - strand, within RR42_RS01625at 370.279 kb on - strand, within RR42_RS01625at 370.364 kb on - strand, within RR42_RS01625at 370.398 kb on + strand, within RR42_RS01625at 370.425 kb on + strand, within RR42_RS01625at 370.501 kb on - strand, within RR42_RS01625at 370.554 kb on + strand, within RR42_RS01625at 370.674 kb on + strand, within RR42_RS01625at 370.675 kb on - strand, within RR42_RS01625at 370.675 kb on - strand, within RR42_RS01625at 370.803 kb on + strand, within RR42_RS01625at 370.803 kb on + strand, within RR42_RS01625at 370.803 kb on + strand, within RR42_RS01625at 370.804 kb on - strand, within RR42_RS01625at 370.804 kb on - strand, within RR42_RS01625at 370.804 kb on - strand, within RR42_RS01625at 370.806 kb on + strand, within RR42_RS01625at 370.887 kb on - strand, within RR42_RS01625at 371.149 kb on - strand, within RR42_RS01625at 371.149 kb on - strand, within RR42_RS01625at 371.274 kb on + strand, within RR42_RS01625at 371.275 kb on - strand, within RR42_RS01625at 371.277 kb on + strand, within RR42_RS01625at 371.277 kb on + strand, within RR42_RS01625at 371.322 kb on + strand, within RR42_RS01625at 371.433 kb on + strand, within RR42_RS01625at 371.464 kb on - strand, within RR42_RS01625at 371.465 kb on + strand, within RR42_RS01625at 371.571 kb on + strand, within RR42_RS01625at 371.572 kb on - strand, within RR42_RS01625at 371.580 kb on + strand, within RR42_RS01625at 371.580 kb on + strand, within RR42_RS01625at 371.766 kb on + strandat 371.767 kb on - strandat 371.767 kb on - strandat 371.767 kb on - strandat 371.768 kb on + strandat 371.768 kb on + strandat 371.805 kb on + strandat 371.900 kb on - strandat 371.900 kb on - strandat 371.900 kb on - strandat 372.163 kb on + strand, within RR42_RS01630at 372.258 kb on - strand, within RR42_RS01630at 372.924 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric (C)
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369,106 + -0.0
369,106 + -0.9
369,107 - +0.3
369,107 - +0.2
369,123 - +1.0
369,187 + RR42_RS01620 0.17 +0.1
369,188 - RR42_RS01620 0.18 -0.4
369,248 + RR42_RS01620 0.27 -0.1
369,464 + RR42_RS01620 0.59 -1.3
369,619 - RR42_RS01620 0.82 -0.6
369,630 - RR42_RS01620 0.84 +0.3
369,643 - RR42_RS01620 0.86 +0.6
369,676 - -1.8
369,812 + -1.2
369,817 + -0.1
369,817 + +0.2
369,817 + +1.1
369,817 + -0.3
369,817 + +0.4
369,909 + +0.6
369,909 + -0.4
369,911 + -1.2
369,912 - +1.0
369,912 - -0.7
370,083 + -1.4
370,084 - -0.6
370,084 - +0.3
370,084 - -0.4
370,084 - +0.4
370,198 - RR42_RS01625 0.11 -0.4
370,249 - RR42_RS01625 0.14 +1.1
370,249 - RR42_RS01625 0.14 +0.9
370,278 + RR42_RS01625 0.15 +0.1
370,278 + RR42_RS01625 0.15 +0.6
370,278 + RR42_RS01625 0.15 +0.1
370,279 - RR42_RS01625 0.15 +0.5
370,279 - RR42_RS01625 0.15 +0.5
370,364 - RR42_RS01625 0.20 -0.4
370,398 + RR42_RS01625 0.21 -1.3
370,425 + RR42_RS01625 0.23 +1.1
370,501 - RR42_RS01625 0.27 -1.4
370,554 + RR42_RS01625 0.29 -1.5
370,674 + RR42_RS01625 0.35 -0.0
370,675 - RR42_RS01625 0.36 +0.7
370,675 - RR42_RS01625 0.36 -0.6
370,803 + RR42_RS01625 0.42 -0.1
370,803 + RR42_RS01625 0.42 -0.2
370,803 + RR42_RS01625 0.42 +0.1
370,804 - RR42_RS01625 0.42 +1.5
370,804 - RR42_RS01625 0.42 -0.1
370,804 - RR42_RS01625 0.42 -0.3
370,806 + RR42_RS01625 0.42 +0.1
370,887 - RR42_RS01625 0.46 -1.5
371,149 - RR42_RS01625 0.60 -0.7
371,149 - RR42_RS01625 0.60 -1.1
371,274 + RR42_RS01625 0.66 -0.2
371,275 - RR42_RS01625 0.66 +0.4
371,277 + RR42_RS01625 0.66 -0.7
371,277 + RR42_RS01625 0.66 -1.2
371,322 + RR42_RS01625 0.68 -0.5
371,433 + RR42_RS01625 0.74 -1.1
371,464 - RR42_RS01625 0.76 +0.5
371,465 + RR42_RS01625 0.76 +0.1
371,571 + RR42_RS01625 0.81 +0.1
371,572 - RR42_RS01625 0.81 +0.9
371,580 + RR42_RS01625 0.81 +1.6
371,580 + RR42_RS01625 0.81 +0.8
371,766 + -0.5
371,767 - +0.1
371,767 - -1.5
371,767 - -1.0
371,768 + -1.2
371,768 + +1.3
371,805 + -0.9
371,900 - +0.1
371,900 - +0.6
371,900 - -1.4
372,163 + RR42_RS01630 0.24 +2.1
372,258 - RR42_RS01630 0.34 +1.6
372,924 + +0.1

Or see this region's nucleotide sequence