Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_972 and HP15_973 are separated by 204 nucleotides HP15_973 and HP15_974 are separated by 99 nucleotides HP15_974 and HP15_975 are separated by 696 nucleotides HP15_975 and HP15_976 are separated by 104 nucleotides
HP15_972: HP15_972 - hypothetical protein, at 983,629 to 984,114
_972
HP15_973: HP15_973 - conserved hypothetical protein, at 984,319 to 984,501
_973
HP15_974: HP15_974 - hypothetical protein, at 984,601 to 984,933
_974
HP15_975: HP15_975 - hypothetical protein, at 985,630 to 985,800
_975
HP15_976: HP15_976 - acetyltransferase, GNAT family protein-like protein, at 985,905 to 986,369
_976
Position (kb) 984
985 Strain fitness (log2 ratio) -2
-1
0
1
2 at 983.657 kb on - strand at 983.709 kb on - strand, within HP15_972 at 983.721 kb on - strand, within HP15_972 at 983.871 kb on + strand, within HP15_972 at 984.040 kb on + strand, within HP15_972 at 984.047 kb on + strand, within HP15_972 at 984.239 kb on - strand at 984.295 kb on + strand at 984.295 kb on - strand at 984.481 kb on - strand, within HP15_973 at 984.481 kb on - strand, within HP15_973 at 984.517 kb on + strand at 984.532 kb on - strand at 984.651 kb on - strand, within HP15_974 at 984.734 kb on + strand, within HP15_974 at 984.787 kb on + strand, within HP15_974 at 984.952 kb on + strand at 984.990 kb on + strand at 985.055 kb on + strand at 985.063 kb on - strand at 985.132 kb on + strand at 985.132 kb on + strand at 985.132 kb on + strand at 985.151 kb on - strand at 985.178 kb on - strand at 985.255 kb on - strand at 985.363 kb on + strand at 985.526 kb on + strand at 985.668 kb on - strand, within HP15_975 at 985.695 kb on + strand, within HP15_975 at 985.783 kb on - strand, within HP15_975 at 985.797 kb on + strand at 985.882 kb on - strand at 985.889 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 983,657 - -1.3 983,709 - HP15_972 0.16 -0.6 983,721 - HP15_972 0.19 +0.4 983,871 + HP15_972 0.50 +0.2 984,040 + HP15_972 0.85 +0.2 984,047 + HP15_972 0.86 -1.2 984,239 - -0.4 984,295 + +0.1 984,295 - -0.3 984,481 - HP15_973 0.89 -0.6 984,481 - HP15_973 0.89 -0.3 984,517 + -0.6 984,532 - +0.6 984,651 - HP15_974 0.15 +0.2 984,734 + HP15_974 0.40 +0.8 984,787 + HP15_974 0.56 +1.0 984,952 + +0.0 984,990 + +0.1 985,055 + -0.6 985,063 - +0.0 985,132 + -0.5 985,132 + +1.2 985,132 + -0.6 985,151 - -1.7 985,178 - +1.8 985,255 - -0.6 985,363 + +0.4 985,526 + +0.6 985,668 - HP15_975 0.22 -0.8 985,695 + HP15_975 0.38 -1.2 985,783 - HP15_975 0.89 -1.0 985,797 + +0.3 985,882 - -1.9 985,889 - -0.7
Or see this region's nucleotide sequence