Strain Fitness in Marinobacter adhaerens HP15 around HP15_532

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_531 and HP15_532 overlap by 28 nucleotidesHP15_532 and HP15_533 are separated by 64 nucleotides HP15_531: HP15_531 - acetolactate synthase, large subunit, biosynthetic type, at 548,178 to 549,896 _531 HP15_532: HP15_532 - acetolactate synthase 3 regulatory subunit, at 549,869 to 550,390 _532 HP15_533: HP15_533 - ketol-acid reductoisomerase, at 550,455 to 551,471 _533 Position (kb) 549 550 551Strain fitness (log2 ratio) -2 -1 0 1 2 3at 548.890 kb on + strand, within HP15_531at 548.900 kb on + strand, within HP15_531at 549.000 kb on - strand, within HP15_531at 549.016 kb on - strand, within HP15_531at 549.158 kb on + strand, within HP15_531at 549.181 kb on - strand, within HP15_531at 549.472 kb on + strand, within HP15_531at 549.509 kb on - strand, within HP15_531at 549.611 kb on + strand, within HP15_531at 549.662 kb on + strand, within HP15_531at 549.827 kb on + strandat 549.881 kb on + strandat 550.256 kb on - strand, within HP15_532at 550.256 kb on - strand, within HP15_532at 550.267 kb on + strand, within HP15_532at 550.296 kb on + strand, within HP15_532at 550.296 kb on + strand, within HP15_532at 550.296 kb on + strand, within HP15_532at 550.383 kb on + strandat 550.393 kb on + strandat 550.404 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
548,890 + HP15_531 0.41 -1.0
548,900 + HP15_531 0.42 +2.2
549,000 - HP15_531 0.48 +2.8
549,016 - HP15_531 0.49 -0.8
549,158 + HP15_531 0.57 +0.9
549,181 - HP15_531 0.58 -0.9
549,472 + HP15_531 0.75 -1.5
549,509 - HP15_531 0.77 -0.9
549,611 + HP15_531 0.83 -1.1
549,662 + HP15_531 0.86 -0.2
549,827 + -1.8
549,881 + -0.3
550,256 - HP15_532 0.74 +0.8
550,256 - HP15_532 0.74 +0.8
550,267 + HP15_532 0.76 -1.2
550,296 + HP15_532 0.82 -0.7
550,296 + HP15_532 0.82 -1.0
550,296 + HP15_532 0.82 -1.8
550,383 + +1.0
550,393 + +1.9
550,404 + +0.2

Or see this region's nucleotide sequence