Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_530 and HP15_531 are separated by 520 nucleotides HP15_531 and HP15_532 overlap by 28 nucleotides HP15_532 and HP15_533 are separated by 64 nucleotides
HP15_530: HP15_530 - conserved hypothetical protein, secreted, at 547,184 to 547,657
_530
HP15_531: HP15_531 - acetolactate synthase, large subunit, biosynthetic type, at 548,178 to 549,896
_531
HP15_532: HP15_532 - acetolactate synthase 3 regulatory subunit, at 549,869 to 550,390
_532
HP15_533: HP15_533 - ketol-acid reductoisomerase, at 550,455 to 551,471
_533
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 547.240 kb on - strand, within HP15_530 at 547.372 kb on + strand, within HP15_530 at 547.540 kb on + strand, within HP15_530 at 547.624 kb on + strand at 547.704 kb on + strand at 547.704 kb on + strand at 547.829 kb on + strand at 547.853 kb on + strand at 548.030 kb on + strand at 548.130 kb on + strand at 548.138 kb on - strand at 548.202 kb on + strand at 548.288 kb on + strand at 548.292 kb on + strand at 548.326 kb on - strand at 548.563 kb on + strand, within HP15_531 at 548.577 kb on - strand, within HP15_531 at 548.618 kb on - strand, within HP15_531 at 548.829 kb on + strand, within HP15_531 at 548.837 kb on - strand, within HP15_531 at 548.890 kb on + strand, within HP15_531 at 548.900 kb on + strand, within HP15_531 at 549.000 kb on - strand, within HP15_531 at 549.016 kb on - strand, within HP15_531 at 549.158 kb on + strand, within HP15_531 at 549.181 kb on - strand, within HP15_531 at 549.472 kb on + strand, within HP15_531 at 549.509 kb on - strand, within HP15_531 at 549.611 kb on + strand, within HP15_531 at 549.662 kb on + strand, within HP15_531 at 549.827 kb on + strand at 549.881 kb on + strand at 550.256 kb on - strand, within HP15_532 at 550.256 kb on - strand, within HP15_532 at 550.267 kb on + strand, within HP15_532 at 550.296 kb on + strand, within HP15_532 at 550.296 kb on + strand, within HP15_532 at 550.296 kb on + strand, within HP15_532 at 550.383 kb on + strand at 550.393 kb on + strand at 550.404 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 547,240 - HP15_530 0.12 +0.9 547,372 + HP15_530 0.40 -0.0 547,540 + HP15_530 0.75 +0.1 547,624 + -0.8 547,704 + -1.2 547,704 + +0.2 547,829 + +2.0 547,853 + +2.4 548,030 + +1.0 548,130 + +1.3 548,138 - -0.8 548,202 + -2.2 548,288 + -2.5 548,292 + +2.0 548,326 - +1.2 548,563 + HP15_531 0.22 -0.3 548,577 - HP15_531 0.23 +1.8 548,618 - HP15_531 0.26 +0.1 548,829 + HP15_531 0.38 -2.2 548,837 - HP15_531 0.38 +2.8 548,890 + HP15_531 0.41 -1.0 548,900 + HP15_531 0.42 +2.2 549,000 - HP15_531 0.48 +2.8 549,016 - HP15_531 0.49 -0.8 549,158 + HP15_531 0.57 +0.9 549,181 - HP15_531 0.58 -0.9 549,472 + HP15_531 0.75 -1.5 549,509 - HP15_531 0.77 -0.9 549,611 + HP15_531 0.83 -1.1 549,662 + HP15_531 0.86 -0.2 549,827 + -1.8 549,881 + -0.3 550,256 - HP15_532 0.74 +0.8 550,256 - HP15_532 0.74 +0.8 550,267 + HP15_532 0.76 -1.2 550,296 + HP15_532 0.82 -0.7 550,296 + HP15_532 0.82 -1.0 550,296 + HP15_532 0.82 -1.8 550,383 + +1.0 550,393 + +1.9 550,404 + +0.2
Or see this region's nucleotide sequence