Strain Fitness in Marinobacter adhaerens HP15 around HP15_472

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_470 and HP15_471 are separated by 263 nucleotidesHP15_471 and HP15_472 are separated by 251 nucleotidesHP15_472 and HP15_473 are separated by 67 nucleotides HP15_470: HP15_470 - primosome assembly protein PriA, at 478,384 to 480,558 _470 HP15_471: HP15_471 - ribosomal protein L31, at 480,822 to 481,043 _471 HP15_472: HP15_472 - malate dehydrogenase (oxaloacetate-decarboxylating), NADP(+), at 481,295 to 482,559 _472 HP15_473: HP15_473 - penicillin-binding protein, 1A family, at 482,627 to 485,116 _473 Position (kb) 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1at 480.558 kb on - strandat 480.558 kb on - strandat 480.602 kb on - strandat 480.663 kb on - strandat 481.413 kb on + strandat 481.421 kb on - strandat 481.531 kb on + strand, within HP15_472at 481.862 kb on - strand, within HP15_472at 481.960 kb on + strand, within HP15_472at 482.096 kb on + strand, within HP15_472at 482.349 kb on + strand, within HP15_472at 482.382 kb on + strand, within HP15_472at 482.382 kb on + strand, within HP15_472at 482.390 kb on - strand, within HP15_472at 482.416 kb on + strand, within HP15_472at 482.451 kb on + strandat 482.519 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
remove
480,558 - +0.5
480,558 - +1.0
480,602 - -1.0
480,663 - +0.2
481,413 + +0.5
481,421 - -1.5
481,531 + HP15_472 0.19 -3.0
481,862 - HP15_472 0.45 -0.3
481,960 + HP15_472 0.53 +1.5
482,096 + HP15_472 0.63 -0.9
482,349 + HP15_472 0.83 +1.0
482,382 + HP15_472 0.86 -0.6
482,382 + HP15_472 0.86 -0.3
482,390 - HP15_472 0.87 +0.7
482,416 + HP15_472 0.89 -0.4
482,451 + -2.5
482,519 - -2.3

Or see this region's nucleotide sequence