Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_456 and HP15_457 overlap by 7 nucleotides HP15_457 and HP15_458 are separated by 119 nucleotides
HP15_456: HP15_456 - phosphohydrolase, at 460,817 to 461,623
_456
HP15_457: HP15_457 - 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase, at 461,617 to 463,896
_457
HP15_458: HP15_458 - transcriptional regulator, LysR family protein, at 464,016 to 464,906
_458
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 460.637 kb on - strand at 460.701 kb on + strand at 460.710 kb on - strand at 461.670 kb on - strand at 461.670 kb on - strand at 461.685 kb on - strand at 461.703 kb on - strand at 461.735 kb on + strand at 461.793 kb on - strand at 461.803 kb on + strand at 461.809 kb on + strand at 461.817 kb on - strand at 461.838 kb on + strand at 461.869 kb on + strand, within HP15_457 at 462.125 kb on - strand, within HP15_457 at 462.156 kb on + strand, within HP15_457 at 462.156 kb on + strand, within HP15_457 at 462.287 kb on + strand, within HP15_457 at 462.325 kb on + strand, within HP15_457 at 462.360 kb on - strand, within HP15_457 at 462.362 kb on + strand, within HP15_457 at 462.370 kb on - strand, within HP15_457 at 462.479 kb on + strand, within HP15_457 at 462.555 kb on - strand, within HP15_457 at 462.626 kb on - strand, within HP15_457 at 462.703 kb on + strand, within HP15_457 at 462.703 kb on + strand, within HP15_457 at 462.727 kb on - strand, within HP15_457 at 462.821 kb on + strand, within HP15_457 at 463.202 kb on + strand, within HP15_457 at 463.202 kb on + strand, within HP15_457 at 463.210 kb on - strand, within HP15_457 at 463.210 kb on - strand, within HP15_457 at 463.232 kb on - strand, within HP15_457 at 463.258 kb on + strand, within HP15_457 at 463.331 kb on - strand, within HP15_457 at 463.341 kb on + strand, within HP15_457 at 463.439 kb on - strand, within HP15_457 at 463.603 kb on + strand, within HP15_457 at 463.611 kb on - strand, within HP15_457 at 464.109 kb on + strand, within HP15_458 at 464.109 kb on + strand, within HP15_458 at 464.117 kb on - strand, within HP15_458 at 464.117 kb on - strand, within HP15_458 at 464.172 kb on + strand, within HP15_458 at 464.312 kb on + strand, within HP15_458 at 464.363 kb on + strand, within HP15_458 at 464.426 kb on + strand, within HP15_458 at 464.521 kb on - strand, within HP15_458 at 464.541 kb on - strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.552 kb on + strand, within HP15_458 at 464.662 kb on - strand, within HP15_458 at 464.677 kb on - strand, within HP15_458 at 464.677 kb on - strand, within HP15_458 at 464.758 kb on - strand, within HP15_458 at 464.764 kb on - strand, within HP15_458 at 464.800 kb on - strand, within HP15_458 at 464.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 460,637 - -0.3 460,701 + +0.0 460,710 - -0.6 461,670 - -1.8 461,670 - -0.2 461,685 - -2.4 461,703 - -0.9 461,735 + -2.1 461,793 - -3.2 461,803 + -1.5 461,809 + -1.8 461,817 - -2.8 461,838 + -4.3 461,869 + HP15_457 0.11 -1.6 462,125 - HP15_457 0.22 -1.6 462,156 + HP15_457 0.24 -2.3 462,156 + HP15_457 0.24 -1.1 462,287 + HP15_457 0.29 -1.4 462,325 + HP15_457 0.31 -3.6 462,360 - HP15_457 0.33 -0.8 462,362 + HP15_457 0.33 +0.5 462,370 - HP15_457 0.33 -0.2 462,479 + HP15_457 0.38 -1.4 462,555 - HP15_457 0.41 -2.2 462,626 - HP15_457 0.44 -2.4 462,703 + HP15_457 0.48 -3.4 462,703 + HP15_457 0.48 -1.0 462,727 - HP15_457 0.49 -1.5 462,821 + HP15_457 0.53 -1.4 463,202 + HP15_457 0.70 -1.6 463,202 + HP15_457 0.70 -1.4 463,210 - HP15_457 0.70 -2.9 463,210 - HP15_457 0.70 -2.6 463,232 - HP15_457 0.71 -2.4 463,258 + HP15_457 0.72 -1.3 463,331 - HP15_457 0.75 -1.2 463,341 + HP15_457 0.76 -1.1 463,439 - HP15_457 0.80 -1.8 463,603 + HP15_457 0.87 -1.5 463,611 - HP15_457 0.87 +0.8 464,109 + HP15_458 0.10 +1.3 464,109 + HP15_458 0.10 -2.1 464,117 - HP15_458 0.11 -1.2 464,117 - HP15_458 0.11 -2.0 464,172 + HP15_458 0.18 -2.4 464,312 + HP15_458 0.33 -2.2 464,363 + HP15_458 0.39 -2.8 464,426 + HP15_458 0.46 -1.2 464,521 - HP15_458 0.57 -0.6 464,541 - HP15_458 0.59 -0.1 464,552 + HP15_458 0.60 -1.9 464,552 + HP15_458 0.60 -2.1 464,552 + HP15_458 0.60 -1.5 464,662 - HP15_458 0.73 -1.3 464,677 - HP15_458 0.74 -1.7 464,677 - HP15_458 0.74 -0.3 464,758 - HP15_458 0.83 -0.1 464,764 - HP15_458 0.84 -0.8 464,800 - HP15_458 0.88 -1.4 464,845 + -1.1
Or see this region's nucleotide sequence