Strain Fitness in Marinobacter adhaerens HP15 around HP15_436

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_435 and HP15_436 are separated by 77 nucleotidesHP15_436 and HP15_437 are separated by 87 nucleotidesHP15_437 and HP15_438 are separated by 23 nucleotides HP15_435: HP15_435 - glutamate-ammonia-ligase adenylyltransferase, at 435,349 to 438,255 _435 HP15_436: HP15_436 - branched-chain-amino-acid aminotransferase, at 438,333 to 439,259 _436 HP15_437: HP15_437 - conserved hypothetical protein, at 439,347 to 439,754 _437 HP15_438: HP15_438 - lipopolysaccharide biosynthesis protein, at 439,778 to 440,836 _438 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 437.359 kb on + strand, within HP15_435at 437.378 kb on + strand, within HP15_435at 437.697 kb on + strand, within HP15_435at 437.705 kb on - strand, within HP15_435at 437.705 kb on - strand, within HP15_435at 437.739 kb on + strand, within HP15_435at 437.747 kb on - strand, within HP15_435at 437.801 kb on + strand, within HP15_435at 437.913 kb on - strand, within HP15_435at 437.932 kb on - strand, within HP15_435at 437.989 kb on + strandat 438.023 kb on + strandat 438.036 kb on - strandat 438.188 kb on - strandat 438.195 kb on - strandat 438.216 kb on + strandat 439.065 kb on + strand, within HP15_436at 439.187 kb on + strandat 439.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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437,359 + HP15_435 0.69 -0.8
437,378 + HP15_435 0.70 -1.7
437,697 + HP15_435 0.81 -1.6
437,705 - HP15_435 0.81 -0.8
437,705 - HP15_435 0.81 -1.1
437,739 + HP15_435 0.82 -1.8
437,747 - HP15_435 0.82 -1.8
437,801 + HP15_435 0.84 +1.0
437,913 - HP15_435 0.88 +0.8
437,932 - HP15_435 0.89 -2.5
437,989 + +0.3
438,023 + +0.4
438,036 - -0.6
438,188 - -0.5
438,195 - -1.8
438,216 + -0.4
439,065 + HP15_436 0.79 +2.3
439,187 + +0.3
439,805 - -0.1

Or see this region's nucleotide sequence