Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_434 and HP15_435 are separated by 80 nucleotides HP15_435 and HP15_436 are separated by 77 nucleotides
HP15_434: HP15_434 - potassium channel protein, at 434,087 to 435,268
_434
HP15_435: HP15_435 - glutamate-ammonia-ligase adenylyltransferase, at 435,349 to 438,255
_435
HP15_436: HP15_436 - branched-chain-amino-acid aminotransferase, at 438,333 to 439,259
_436
Position (kb) 435
436
437
438
439 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 434.388 kb on - strand, within HP15_434 at 434.428 kb on - strand, within HP15_434 at 434.500 kb on + strand, within HP15_434 at 434.524 kb on + strand, within HP15_434 at 434.632 kb on - strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 435.092 kb on - strand, within HP15_434 at 435.110 kb on - strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.127 kb on - strand, within HP15_434 at 435.304 kb on + strand at 435.339 kb on + strand at 435.339 kb on + strand at 435.491 kb on + strand at 435.491 kb on + strand at 435.545 kb on - strand at 435.581 kb on - strand at 435.828 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.896 kb on + strand, within HP15_435 at 436.004 kb on + strand, within HP15_435 at 436.028 kb on - strand, within HP15_435 at 436.098 kb on - strand, within HP15_435 at 436.300 kb on - strand, within HP15_435 at 436.379 kb on + strand, within HP15_435 at 436.454 kb on + strand, within HP15_435 at 436.499 kb on + strand, within HP15_435 at 436.558 kb on + strand, within HP15_435 at 436.607 kb on - strand, within HP15_435 at 436.654 kb on - strand, within HP15_435 at 436.677 kb on - strand, within HP15_435 at 436.752 kb on + strand, within HP15_435 at 436.835 kb on + strand, within HP15_435 at 436.879 kb on + strand, within HP15_435 at 436.920 kb on + strand, within HP15_435 at 436.928 kb on - strand, within HP15_435 at 436.956 kb on + strand, within HP15_435 at 436.985 kb on - strand, within HP15_435 at 437.010 kb on + strand, within HP15_435 at 437.057 kb on + strand, within HP15_435 at 437.065 kb on - strand, within HP15_435 at 437.152 kb on + strand, within HP15_435 at 437.268 kb on + strand, within HP15_435 at 437.359 kb on + strand, within HP15_435 at 437.378 kb on + strand, within HP15_435 at 437.697 kb on + strand, within HP15_435 at 437.705 kb on - strand, within HP15_435 at 437.705 kb on - strand, within HP15_435 at 437.739 kb on + strand, within HP15_435 at 437.747 kb on - strand, within HP15_435 at 437.801 kb on + strand, within HP15_435 at 437.913 kb on - strand, within HP15_435 at 437.932 kb on - strand, within HP15_435 at 437.989 kb on + strand at 438.023 kb on + strand at 438.036 kb on - strand at 438.188 kb on - strand at 438.195 kb on - strand at 438.216 kb on + strand at 439.065 kb on + strand, within HP15_436 at 439.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 434,388 - HP15_434 0.25 -0.7 434,428 - HP15_434 0.29 +0.9 434,500 + HP15_434 0.35 +0.1 434,524 + HP15_434 0.37 +0.1 434,632 - HP15_434 0.46 +1.1 434,869 + HP15_434 0.66 -0.2 434,869 + HP15_434 0.66 -3.5 434,877 - HP15_434 0.67 +0.6 434,877 - HP15_434 0.67 -0.8 435,092 - HP15_434 0.85 +0.6 435,110 - HP15_434 0.87 +0.1 435,112 + HP15_434 0.87 -1.0 435,112 + HP15_434 0.87 -0.8 435,127 - HP15_434 0.88 +1.2 435,304 + -0.2 435,339 + -0.4 435,339 + -1.8 435,491 + +1.2 435,491 + +0.1 435,545 - +2.1 435,581 - +2.5 435,828 + HP15_435 0.16 -0.6 435,876 + HP15_435 0.18 -1.0 435,876 + HP15_435 0.18 -0.7 435,896 + HP15_435 0.19 -1.2 436,004 + HP15_435 0.23 -0.4 436,028 - HP15_435 0.23 -0.4 436,098 - HP15_435 0.26 -1.6 436,300 - HP15_435 0.33 -0.1 436,379 + HP15_435 0.35 -1.8 436,454 + HP15_435 0.38 -0.2 436,499 + HP15_435 0.40 -1.2 436,558 + HP15_435 0.42 -0.1 436,607 - HP15_435 0.43 +1.0 436,654 - HP15_435 0.45 +0.8 436,677 - HP15_435 0.46 +1.3 436,752 + HP15_435 0.48 -0.7 436,835 + HP15_435 0.51 -2.4 436,879 + HP15_435 0.53 -1.2 436,920 + HP15_435 0.54 -3.3 436,928 - HP15_435 0.54 -0.4 436,956 + HP15_435 0.55 -2.1 436,985 - HP15_435 0.56 +1.0 437,010 + HP15_435 0.57 -0.6 437,057 + HP15_435 0.59 -2.0 437,065 - HP15_435 0.59 +0.8 437,152 + HP15_435 0.62 +0.1 437,268 + HP15_435 0.66 +0.4 437,359 + HP15_435 0.69 -0.8 437,378 + HP15_435 0.70 -1.7 437,697 + HP15_435 0.81 -1.6 437,705 - HP15_435 0.81 -0.8 437,705 - HP15_435 0.81 -1.1 437,739 + HP15_435 0.82 -1.8 437,747 - HP15_435 0.82 -1.8 437,801 + HP15_435 0.84 +1.0 437,913 - HP15_435 0.88 +0.8 437,932 - HP15_435 0.89 -2.5 437,989 + +0.3 438,023 + +0.4 438,036 - -0.6 438,188 - -0.5 438,195 - -1.8 438,216 + -0.4 439,065 + HP15_436 0.79 +2.3 439,187 + +0.3
Or see this region's nucleotide sequence