Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_432 and HP15_433 are separated by 93 nucleotides HP15_433 and HP15_434 are separated by 27 nucleotides HP15_434 and HP15_435 are separated by 80 nucleotides
HP15_432: HP15_432 - outer membrane protein (porin), at 432,095 to 433,102
_432
HP15_433: HP15_433 - adenylate cyclase, at 433,196 to 434,059
_433
HP15_434: HP15_434 - potassium channel protein, at 434,087 to 435,268
_434
HP15_435: HP15_435 - glutamate-ammonia-ligase adenylyltransferase, at 435,349 to 438,255
_435
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.236 kb on + strand at 433.261 kb on - strand at 433.261 kb on - strand at 433.288 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.348 kb on + strand, within HP15_433 at 433.361 kb on - strand, within HP15_433 at 433.406 kb on - strand, within HP15_433 at 433.445 kb on + strand, within HP15_433 at 433.649 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.689 kb on + strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.697 kb on - strand, within HP15_433 at 433.758 kb on + strand, within HP15_433 at 433.784 kb on + strand, within HP15_433 at 433.792 kb on - strand, within HP15_433 at 433.812 kb on - strand, within HP15_433 at 434.001 kb on + strand at 434.183 kb on + strand at 434.191 kb on - strand at 434.217 kb on - strand, within HP15_434 at 434.388 kb on - strand, within HP15_434 at 434.428 kb on - strand, within HP15_434 at 434.500 kb on + strand, within HP15_434 at 434.524 kb on + strand, within HP15_434 at 434.632 kb on - strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.869 kb on + strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 434.877 kb on - strand, within HP15_434 at 435.092 kb on - strand, within HP15_434 at 435.110 kb on - strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.112 kb on + strand, within HP15_434 at 435.127 kb on - strand, within HP15_434 at 435.304 kb on + strand at 435.339 kb on + strand at 435.339 kb on + strand at 435.491 kb on + strand at 435.491 kb on + strand at 435.545 kb on - strand at 435.581 kb on - strand at 435.828 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.876 kb on + strand, within HP15_435 at 435.896 kb on + strand, within HP15_435 at 436.004 kb on + strand, within HP15_435 at 436.028 kb on - strand, within HP15_435 at 436.098 kb on - strand, within HP15_435
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 433,236 + +0.6 433,261 - +0.0 433,261 - +0.5 433,288 + HP15_433 0.11 +0.7 433,348 + HP15_433 0.18 -0.3 433,348 + HP15_433 0.18 +1.2 433,348 + HP15_433 0.18 -0.8 433,361 - HP15_433 0.19 +0.8 433,406 - HP15_433 0.24 -1.7 433,445 + HP15_433 0.29 +0.9 433,649 + HP15_433 0.52 +1.0 433,689 + HP15_433 0.57 -0.7 433,689 + HP15_433 0.57 -0.7 433,689 + HP15_433 0.57 -0.7 433,689 + HP15_433 0.57 +0.7 433,697 - HP15_433 0.58 +0.0 433,697 - HP15_433 0.58 +0.4 433,697 - HP15_433 0.58 -0.2 433,697 - HP15_433 0.58 -0.5 433,758 + HP15_433 0.65 -0.2 433,784 + HP15_433 0.68 -1.1 433,792 - HP15_433 0.69 -0.6 433,812 - HP15_433 0.71 +0.5 434,001 + -1.8 434,183 + -0.5 434,191 - +1.2 434,217 - HP15_434 0.11 -0.4 434,388 - HP15_434 0.25 -0.7 434,428 - HP15_434 0.29 +0.9 434,500 + HP15_434 0.35 +0.1 434,524 + HP15_434 0.37 +0.1 434,632 - HP15_434 0.46 +1.1 434,869 + HP15_434 0.66 -0.2 434,869 + HP15_434 0.66 -3.5 434,877 - HP15_434 0.67 +0.6 434,877 - HP15_434 0.67 -0.8 435,092 - HP15_434 0.85 +0.6 435,110 - HP15_434 0.87 +0.1 435,112 + HP15_434 0.87 -1.0 435,112 + HP15_434 0.87 -0.8 435,127 - HP15_434 0.88 +1.2 435,304 + -0.2 435,339 + -0.4 435,339 + -1.8 435,491 + +1.2 435,491 + +0.1 435,545 - +2.1 435,581 - +2.5 435,828 + HP15_435 0.16 -0.6 435,876 + HP15_435 0.18 -1.0 435,876 + HP15_435 0.18 -0.7 435,896 + HP15_435 0.19 -1.2 436,004 + HP15_435 0.23 -0.4 436,028 - HP15_435 0.23 -0.4 436,098 - HP15_435 0.26 -1.6
Or see this region's nucleotide sequence