Strain Fitness in Marinobacter adhaerens HP15 around HP15_2647

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2646 and HP15_2647 are separated by 99 nucleotidesHP15_2647 and HP15_2648 are separated by 32 nucleotidesHP15_2648 and HP15_2649 overlap by 14 nucleotides HP15_2646: HP15_2646 - radical SAM domain protein, at 2,796,298 to 2,797,359 _2646 HP15_2647: HP15_2647 - peptidoglycan-binding domain 1 protein, at 2,797,459 to 2,799,111 _2647 HP15_2648: HP15_2648 - conserved hypothetical protein, at 2,799,144 to 2,799,596 _2648 HP15_2649: HP15_2649 - alpha/beta hydrolase fold protein, at 2,799,583 to 2,800,518 _2649 Position (kb) 2797 2798 2799 2800Strain fitness (log2 ratio) -2 -1 0 1 2at 2796.489 kb on - strand, within HP15_2646at 2796.545 kb on + strand, within HP15_2646at 2796.645 kb on - strand, within HP15_2646at 2796.649 kb on + strand, within HP15_2646at 2796.806 kb on + strand, within HP15_2646at 2796.840 kb on + strand, within HP15_2646at 2796.840 kb on + strand, within HP15_2646at 2796.848 kb on - strand, within HP15_2646at 2796.876 kb on - strand, within HP15_2646at 2796.927 kb on + strand, within HP15_2646at 2796.945 kb on + strand, within HP15_2646at 2797.139 kb on + strand, within HP15_2646at 2797.147 kb on - strand, within HP15_2646at 2797.187 kb on + strand, within HP15_2646at 2797.245 kb on - strand, within HP15_2646at 2797.295 kb on + strandat 2797.351 kb on + strandat 2797.402 kb on + strandat 2797.431 kb on + strandat 2797.694 kb on + strand, within HP15_2647at 2797.771 kb on - strand, within HP15_2647at 2797.804 kb on - strand, within HP15_2647at 2797.823 kb on + strand, within HP15_2647at 2797.828 kb on - strand, within HP15_2647at 2798.000 kb on + strand, within HP15_2647at 2798.028 kb on + strand, within HP15_2647at 2798.033 kb on + strand, within HP15_2647at 2798.033 kb on + strand, within HP15_2647at 2798.080 kb on + strand, within HP15_2647at 2798.155 kb on - strand, within HP15_2647at 2798.175 kb on + strand, within HP15_2647at 2798.398 kb on + strand, within HP15_2647at 2798.425 kb on + strand, within HP15_2647at 2798.495 kb on - strand, within HP15_2647at 2798.517 kb on - strand, within HP15_2647at 2798.573 kb on - strand, within HP15_2647at 2798.617 kb on - strand, within HP15_2647at 2798.633 kb on + strand, within HP15_2647at 2798.904 kb on + strand, within HP15_2647at 2798.991 kb on - strandat 2799.071 kb on - strandat 2799.130 kb on + strandat 2799.279 kb on - strand, within HP15_2648at 2799.399 kb on - strand, within HP15_2648at 2799.401 kb on + strand, within HP15_2648at 2799.460 kb on + strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.545 kb on - strand, within HP15_2648at 2799.552 kb on - strandat 2799.918 kb on - strand, within HP15_2649at 2799.924 kb on - strand, within HP15_2649at 2800.014 kb on + strand, within HP15_2649at 2800.022 kb on - strand, within HP15_2649

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,796,489 - HP15_2646 0.18 +0.5
2,796,545 + HP15_2646 0.23 -0.8
2,796,645 - HP15_2646 0.33 +0.5
2,796,649 + HP15_2646 0.33 +0.2
2,796,806 + HP15_2646 0.48 -0.1
2,796,840 + HP15_2646 0.51 -0.2
2,796,840 + HP15_2646 0.51 -0.9
2,796,848 - HP15_2646 0.52 +1.5
2,796,876 - HP15_2646 0.54 -0.4
2,796,927 + HP15_2646 0.59 +0.5
2,796,945 + HP15_2646 0.61 -0.7
2,797,139 + HP15_2646 0.79 -1.6
2,797,147 - HP15_2646 0.80 +1.1
2,797,187 + HP15_2646 0.84 +0.7
2,797,245 - HP15_2646 0.89 -0.6
2,797,295 + -0.8
2,797,351 + -0.3
2,797,402 + +1.0
2,797,431 + +0.6
2,797,694 + HP15_2647 0.14 -1.1
2,797,771 - HP15_2647 0.19 -0.1
2,797,804 - HP15_2647 0.21 -0.2
2,797,823 + HP15_2647 0.22 +1.2
2,797,828 - HP15_2647 0.22 +1.4
2,798,000 + HP15_2647 0.33 +1.5
2,798,028 + HP15_2647 0.34 -0.5
2,798,033 + HP15_2647 0.35 +0.8
2,798,033 + HP15_2647 0.35 +0.6
2,798,080 + HP15_2647 0.38 -2.1
2,798,155 - HP15_2647 0.42 -0.4
2,798,175 + HP15_2647 0.43 -0.3
2,798,398 + HP15_2647 0.57 +1.8
2,798,425 + HP15_2647 0.58 +1.5
2,798,495 - HP15_2647 0.63 -0.6
2,798,517 - HP15_2647 0.64 +0.3
2,798,573 - HP15_2647 0.67 +0.1
2,798,617 - HP15_2647 0.70 +0.6
2,798,633 + HP15_2647 0.71 +1.0
2,798,904 + HP15_2647 0.87 -1.2
2,798,991 - +0.2
2,799,071 - +0.2
2,799,130 + -0.3
2,799,279 - HP15_2648 0.30 -0.8
2,799,399 - HP15_2648 0.56 +0.4
2,799,401 + HP15_2648 0.57 +1.5
2,799,460 + HP15_2648 0.70 +2.0
2,799,545 - HP15_2648 0.89 -0.1
2,799,545 - HP15_2648 0.89 +1.7
2,799,545 - HP15_2648 0.89 +0.1
2,799,552 - +0.2
2,799,918 - HP15_2649 0.36 -0.7
2,799,924 - HP15_2649 0.36 +1.3
2,800,014 + HP15_2649 0.46 -0.6
2,800,022 - HP15_2649 0.47 +0.3

Or see this region's nucleotide sequence