Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2631 and HP15_2632 are separated by 97 nucleotides HP15_2632 and HP15_2633 overlap by 29 nucleotides HP15_2633 and HP15_2634 are separated by 99 nucleotides
HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268
_2631
HP15_2632: HP15_2632 - ribonuclease Z, at 2,783,366 to 2,784,445
_2632
HP15_2633: HP15_2633 - conserved hypothetical protein, secreted, at 2,784,417 to 2,785,247
_2633
HP15_2634: HP15_2634 - lipoprotein, at 2,785,347 to 2,786,054
_2634
Position (kb)
2783
2784
2785 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2782.367 kb on + strand, within HP15_2631 at 2782.499 kb on + strand, within HP15_2631 at 2782.499 kb on + strand, within HP15_2631 at 2782.515 kb on - strand, within HP15_2631 at 2782.563 kb on - strand, within HP15_2631 at 2782.564 kb on - strand, within HP15_2631 at 2782.564 kb on - strand, within HP15_2631 at 2782.586 kb on - strand, within HP15_2631 at 2782.613 kb on - strand, within HP15_2631 at 2782.895 kb on - strand, within HP15_2631 at 2782.903 kb on + strand, within HP15_2631 at 2782.970 kb on + strand, within HP15_2631 at 2782.999 kb on - strand, within HP15_2631 at 2783.215 kb on + strand at 2783.293 kb on - strand at 2783.371 kb on - strand at 2783.409 kb on - strand at 2783.414 kb on - strand at 2783.414 kb on - strand at 2783.420 kb on + strand at 2783.454 kb on - strand at 2783.579 kb on + strand, within HP15_2632 at 2783.586 kb on + strand, within HP15_2632 at 2783.587 kb on - strand, within HP15_2632 at 2783.928 kb on - strand, within HP15_2632 at 2783.998 kb on + strand, within HP15_2632 at 2784.111 kb on + strand, within HP15_2632 at 2784.225 kb on - strand, within HP15_2632 at 2784.236 kb on - strand, within HP15_2632 at 2784.308 kb on - strand, within HP15_2632 at 2784.340 kb on - strand at 2784.412 kb on + strand at 2784.560 kb on + strand, within HP15_2633 at 2784.740 kb on - strand, within HP15_2633 at 2784.748 kb on + strand, within HP15_2633 at 2784.756 kb on - strand, within HP15_2633 at 2784.820 kb on + strand, within HP15_2633 at 2784.828 kb on - strand, within HP15_2633 at 2784.828 kb on - strand, within HP15_2633 at 2784.870 kb on + strand, within HP15_2633 at 2784.886 kb on - strand, within HP15_2633 at 2784.936 kb on + strand, within HP15_2633 at 2784.936 kb on + strand, within HP15_2633 at 2784.936 kb on + strand, within HP15_2633 at 2784.944 kb on - strand, within HP15_2633 at 2784.946 kb on + strand, within HP15_2633 at 2784.946 kb on + strand, within HP15_2633 at 2784.954 kb on - strand, within HP15_2633 at 2785.021 kb on - strand, within HP15_2633 at 2785.115 kb on - strand, within HP15_2633 at 2785.118 kb on + strand, within HP15_2633 at 2785.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 2,782,367 + HP15_2631 0.24 +1.8 2,782,499 + HP15_2631 0.35 -0.1 2,782,499 + HP15_2631 0.35 -0.5 2,782,515 - HP15_2631 0.36 -0.6 2,782,563 - HP15_2631 0.40 -0.2 2,782,564 - HP15_2631 0.40 -0.1 2,782,564 - HP15_2631 0.40 -0.9 2,782,586 - HP15_2631 0.42 +0.1 2,782,613 - HP15_2631 0.45 -0.4 2,782,895 - HP15_2631 0.68 +1.2 2,782,903 + HP15_2631 0.69 -0.6 2,782,970 + HP15_2631 0.75 -0.7 2,782,999 - HP15_2631 0.77 +2.6 2,783,215 + -2.2 2,783,293 - +0.9 2,783,371 - -1.9 2,783,409 - +0.9 2,783,414 - -0.6 2,783,414 - +1.1 2,783,420 + -1.3 2,783,454 - +0.1 2,783,579 + HP15_2632 0.20 -1.6 2,783,586 + HP15_2632 0.20 -0.3 2,783,587 - HP15_2632 0.20 -0.1 2,783,928 - HP15_2632 0.52 +0.7 2,783,998 + HP15_2632 0.59 -0.5 2,784,111 + HP15_2632 0.69 -0.4 2,784,225 - HP15_2632 0.80 -0.0 2,784,236 - HP15_2632 0.81 -1.4 2,784,308 - HP15_2632 0.87 -1.4 2,784,340 - -0.2 2,784,412 + -0.3 2,784,560 + HP15_2633 0.17 +1.0 2,784,740 - HP15_2633 0.39 +0.2 2,784,748 + HP15_2633 0.40 -0.4 2,784,756 - HP15_2633 0.41 +0.1 2,784,820 + HP15_2633 0.48 +0.1 2,784,828 - HP15_2633 0.49 -3.0 2,784,828 - HP15_2633 0.49 +0.8 2,784,870 + HP15_2633 0.55 -0.5 2,784,886 - HP15_2633 0.56 +0.7 2,784,936 + HP15_2633 0.62 +1.1 2,784,936 + HP15_2633 0.62 +1.3 2,784,936 + HP15_2633 0.62 +1.0 2,784,944 - HP15_2633 0.63 -0.4 2,784,946 + HP15_2633 0.64 -0.8 2,784,946 + HP15_2633 0.64 -0.2 2,784,954 - HP15_2633 0.65 -0.7 2,785,021 - HP15_2633 0.73 +0.4 2,785,115 - HP15_2633 0.84 +0.7 2,785,118 + HP15_2633 0.84 +0.1 2,785,192 - +0.2
Or see this region's nucleotide sequence