Strain Fitness in Marinobacter adhaerens HP15 around HP15_2632

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2631 and HP15_2632 are separated by 97 nucleotidesHP15_2632 and HP15_2633 overlap by 29 nucleotidesHP15_2633 and HP15_2634 are separated by 99 nucleotides HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268 _2631 HP15_2632: HP15_2632 - ribonuclease Z, at 2,783,366 to 2,784,445 _2632 HP15_2633: HP15_2633 - conserved hypothetical protein, secreted, at 2,784,417 to 2,785,247 _2633 HP15_2634: HP15_2634 - lipoprotein, at 2,785,347 to 2,786,054 _2634 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2782.367 kb on + strand, within HP15_2631at 2782.499 kb on + strand, within HP15_2631at 2782.499 kb on + strand, within HP15_2631at 2782.515 kb on - strand, within HP15_2631at 2782.563 kb on - strand, within HP15_2631at 2782.564 kb on - strand, within HP15_2631at 2782.564 kb on - strand, within HP15_2631at 2782.586 kb on - strand, within HP15_2631at 2782.613 kb on - strand, within HP15_2631at 2782.895 kb on - strand, within HP15_2631at 2782.903 kb on + strand, within HP15_2631at 2782.970 kb on + strand, within HP15_2631at 2782.999 kb on - strand, within HP15_2631at 2783.215 kb on + strandat 2783.293 kb on - strandat 2783.371 kb on - strandat 2783.409 kb on - strandat 2783.414 kb on - strandat 2783.414 kb on - strandat 2783.420 kb on + strandat 2783.454 kb on - strandat 2783.579 kb on + strand, within HP15_2632at 2783.586 kb on + strand, within HP15_2632at 2783.587 kb on - strand, within HP15_2632at 2783.928 kb on - strand, within HP15_2632at 2783.998 kb on + strand, within HP15_2632at 2784.111 kb on + strand, within HP15_2632at 2784.225 kb on - strand, within HP15_2632at 2784.236 kb on - strand, within HP15_2632at 2784.308 kb on - strand, within HP15_2632at 2784.340 kb on - strandat 2784.412 kb on + strandat 2784.560 kb on + strand, within HP15_2633at 2784.740 kb on - strand, within HP15_2633at 2784.748 kb on + strand, within HP15_2633at 2784.756 kb on - strand, within HP15_2633at 2784.820 kb on + strand, within HP15_2633at 2784.828 kb on - strand, within HP15_2633at 2784.828 kb on - strand, within HP15_2633at 2784.870 kb on + strand, within HP15_2633at 2784.886 kb on - strand, within HP15_2633at 2784.936 kb on + strand, within HP15_2633at 2784.936 kb on + strand, within HP15_2633at 2784.936 kb on + strand, within HP15_2633at 2784.944 kb on - strand, within HP15_2633at 2784.946 kb on + strand, within HP15_2633at 2784.946 kb on + strand, within HP15_2633at 2784.954 kb on - strand, within HP15_2633at 2785.021 kb on - strand, within HP15_2633at 2785.115 kb on - strand, within HP15_2633at 2785.118 kb on + strand, within HP15_2633at 2785.192 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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2,782,367 + HP15_2631 0.24 +1.8
2,782,499 + HP15_2631 0.35 -0.1
2,782,499 + HP15_2631 0.35 -0.5
2,782,515 - HP15_2631 0.36 -0.6
2,782,563 - HP15_2631 0.40 -0.2
2,782,564 - HP15_2631 0.40 -0.1
2,782,564 - HP15_2631 0.40 -0.9
2,782,586 - HP15_2631 0.42 +0.1
2,782,613 - HP15_2631 0.45 -0.4
2,782,895 - HP15_2631 0.68 +1.2
2,782,903 + HP15_2631 0.69 -0.6
2,782,970 + HP15_2631 0.75 -0.7
2,782,999 - HP15_2631 0.77 +2.6
2,783,215 + -2.2
2,783,293 - +0.9
2,783,371 - -1.9
2,783,409 - +0.9
2,783,414 - -0.6
2,783,414 - +1.1
2,783,420 + -1.3
2,783,454 - +0.1
2,783,579 + HP15_2632 0.20 -1.6
2,783,586 + HP15_2632 0.20 -0.3
2,783,587 - HP15_2632 0.20 -0.1
2,783,928 - HP15_2632 0.52 +0.7
2,783,998 + HP15_2632 0.59 -0.5
2,784,111 + HP15_2632 0.69 -0.4
2,784,225 - HP15_2632 0.80 -0.0
2,784,236 - HP15_2632 0.81 -1.4
2,784,308 - HP15_2632 0.87 -1.4
2,784,340 - -0.2
2,784,412 + -0.3
2,784,560 + HP15_2633 0.17 +1.0
2,784,740 - HP15_2633 0.39 +0.2
2,784,748 + HP15_2633 0.40 -0.4
2,784,756 - HP15_2633 0.41 +0.1
2,784,820 + HP15_2633 0.48 +0.1
2,784,828 - HP15_2633 0.49 -3.0
2,784,828 - HP15_2633 0.49 +0.8
2,784,870 + HP15_2633 0.55 -0.5
2,784,886 - HP15_2633 0.56 +0.7
2,784,936 + HP15_2633 0.62 +1.1
2,784,936 + HP15_2633 0.62 +1.3
2,784,936 + HP15_2633 0.62 +1.0
2,784,944 - HP15_2633 0.63 -0.4
2,784,946 + HP15_2633 0.64 -0.8
2,784,946 + HP15_2633 0.64 -0.2
2,784,954 - HP15_2633 0.65 -0.7
2,785,021 - HP15_2633 0.73 +0.4
2,785,115 - HP15_2633 0.84 +0.7
2,785,118 + HP15_2633 0.84 +0.1
2,785,192 - +0.2

Or see this region's nucleotide sequence