Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_265 and HP15_266 are separated by 21 nucleotides HP15_266 and HP15_267 are separated by 230 nucleotides
HP15_265: HP15_265 - sodium/hydrogen exchanger family protein, at 254,735 to 256,612
_265
HP15_266: HP15_266 - UBA/THIF-type NAD/FAD binding protein, at 256,634 to 257,467
_266
HP15_267: HP15_267 - acyl-CoA dehydrogenase family protein, at 257,698 to 259,473
_267
Position (kb) 256
257
258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 255.760 kb on + strand, within HP15_265 at 255.779 kb on + strand, within HP15_265 at 255.880 kb on + strand, within HP15_265 at 255.925 kb on + strand, within HP15_265 at 256.076 kb on + strand, within HP15_265 at 256.081 kb on + strand, within HP15_265 at 256.182 kb on - strand, within HP15_265 at 256.194 kb on + strand, within HP15_265 at 256.250 kb on + strand, within HP15_265 at 256.263 kb on + strand, within HP15_265 at 256.271 kb on - strand, within HP15_265 at 256.271 kb on - strand, within HP15_265 at 256.313 kb on + strand, within HP15_265 at 256.326 kb on - strand, within HP15_265 at 256.333 kb on + strand, within HP15_265 at 256.333 kb on + strand, within HP15_265 at 256.340 kb on - strand, within HP15_265 at 256.392 kb on - strand, within HP15_265 at 256.475 kb on + strand at 256.483 kb on - strand at 256.527 kb on + strand at 256.551 kb on - strand at 256.589 kb on + strand at 256.597 kb on - strand at 256.717 kb on + strand at 256.810 kb on + strand, within HP15_266 at 256.918 kb on - strand, within HP15_266 at 256.930 kb on + strand, within HP15_266 at 256.936 kb on - strand, within HP15_266 at 256.943 kb on + strand, within HP15_266 at 257.016 kb on - strand, within HP15_266 at 257.066 kb on + strand, within HP15_266 at 257.074 kb on - strand, within HP15_266 at 257.137 kb on - strand, within HP15_266 at 257.332 kb on + strand, within HP15_266 at 257.337 kb on + strand, within HP15_266 at 257.356 kb on - strand, within HP15_266 at 257.443 kb on - strand at 257.448 kb on - strand at 257.586 kb on - strand at 257.677 kb on - strand at 257.705 kb on + strand at 257.732 kb on + strand at 257.836 kb on + strand at 257.888 kb on + strand, within HP15_267 at 257.891 kb on - strand, within HP15_267 at 257.891 kb on - strand, within HP15_267 at 257.896 kb on - strand, within HP15_267 at 257.953 kb on - strand, within HP15_267 at 258.030 kb on - strand, within HP15_267 at 258.037 kb on + strand, within HP15_267 at 258.077 kb on + strand, within HP15_267 at 258.107 kb on + strand, within HP15_267 at 258.236 kb on + strand, within HP15_267 at 258.273 kb on - strand, within HP15_267 at 258.369 kb on + strand, within HP15_267 at 258.401 kb on - strand, within HP15_267 at 258.412 kb on - strand, within HP15_267 at 258.423 kb on - strand, within HP15_267
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 255,760 + HP15_265 0.55 -0.1 255,779 + HP15_265 0.56 -0.6 255,880 + HP15_265 0.61 -0.9 255,925 + HP15_265 0.63 -1.0 256,076 + HP15_265 0.71 +0.9 256,081 + HP15_265 0.72 -1.4 256,182 - HP15_265 0.77 +0.7 256,194 + HP15_265 0.78 +3.0 256,250 + HP15_265 0.81 -0.0 256,263 + HP15_265 0.81 -0.5 256,271 - HP15_265 0.82 -1.0 256,271 - HP15_265 0.82 -0.4 256,313 + HP15_265 0.84 -0.7 256,326 - HP15_265 0.85 -1.1 256,333 + HP15_265 0.85 -1.2 256,333 + HP15_265 0.85 -0.2 256,340 - HP15_265 0.85 -0.5 256,392 - HP15_265 0.88 -0.9 256,475 + -0.7 256,483 - +0.4 256,527 + -0.2 256,551 - -0.2 256,589 + +0.7 256,597 - +1.7 256,717 + +0.7 256,810 + HP15_266 0.21 -0.1 256,918 - HP15_266 0.34 -3.2 256,930 + HP15_266 0.35 -0.2 256,936 - HP15_266 0.36 -0.1 256,943 + HP15_266 0.37 -0.5 257,016 - HP15_266 0.46 -1.2 257,066 + HP15_266 0.52 +0.4 257,074 - HP15_266 0.53 -0.5 257,137 - HP15_266 0.60 +1.8 257,332 + HP15_266 0.84 -1.2 257,337 + HP15_266 0.84 +0.2 257,356 - HP15_266 0.87 +2.7 257,443 - -1.1 257,448 - -0.0 257,586 - +0.3 257,677 - +0.9 257,705 + +0.0 257,732 + +0.2 257,836 + +0.1 257,888 + HP15_267 0.11 -0.1 257,891 - HP15_267 0.11 -1.2 257,891 - HP15_267 0.11 -1.1 257,896 - HP15_267 0.11 +0.3 257,953 - HP15_267 0.14 -0.2 258,030 - HP15_267 0.19 +0.2 258,037 + HP15_267 0.19 -0.5 258,077 + HP15_267 0.21 +0.1 258,107 + HP15_267 0.23 -1.0 258,236 + HP15_267 0.30 +0.8 258,273 - HP15_267 0.32 -0.9 258,369 + HP15_267 0.38 -0.8 258,401 - HP15_267 0.40 -0.1 258,412 - HP15_267 0.40 -0.1 258,423 - HP15_267 0.41 +0.2
Or see this region's nucleotide sequence