Strain Fitness in Marinobacter adhaerens HP15 around HP15_22

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_21 and HP15_22 are separated by 76 nucleotidesHP15_22 and HP15_23 are separated by 244 nucleotides HP15_21: HP15_21 - dioxygenase DitA oxygenase component large subunit, at 23,708 to 25,102 _21 HP15_22: HP15_22 - aromatic-ring-hydroxylating dioxygenase beta subunit, at 25,179 to 25,754 _22 HP15_23: HP15_23 - conserved hypothetical protein, at 25,999 to 27,033 _23 Position (kb) 25 26Strain fitness (log2 ratio) -2 -1 0 1 2at 24.181 kb on - strand, within HP15_21at 24.228 kb on - strand, within HP15_21at 24.252 kb on + strand, within HP15_21at 24.260 kb on - strand, within HP15_21at 24.275 kb on - strand, within HP15_21at 24.296 kb on + strand, within HP15_21at 24.296 kb on + strand, within HP15_21at 24.303 kb on + strand, within HP15_21at 24.311 kb on - strand, within HP15_21at 24.311 kb on - strand, within HP15_21at 24.366 kb on + strand, within HP15_21at 24.366 kb on + strand, within HP15_21at 24.366 kb on + strand, within HP15_21at 24.373 kb on - strand, within HP15_21at 24.455 kb on - strand, within HP15_21at 24.462 kb on + strand, within HP15_21at 24.462 kb on + strand, within HP15_21at 24.469 kb on + strand, within HP15_21at 24.470 kb on - strand, within HP15_21at 24.470 kb on - strand, within HP15_21at 24.477 kb on - strand, within HP15_21at 24.499 kb on - strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.501 kb on + strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.509 kb on - strand, within HP15_21at 24.607 kb on - strand, within HP15_21at 24.668 kb on - strand, within HP15_21at 24.669 kb on + strand, within HP15_21at 24.677 kb on - strand, within HP15_21at 24.678 kb on - strand, within HP15_21at 24.743 kb on + strand, within HP15_21at 24.743 kb on - strand, within HP15_21at 24.747 kb on + strand, within HP15_21at 24.789 kb on + strand, within HP15_21at 24.890 kb on - strand, within HP15_21at 24.901 kb on + strand, within HP15_21at 24.901 kb on + strand, within HP15_21at 24.913 kb on + strand, within HP15_21at 24.961 kb on - strand, within HP15_21at 24.999 kb on - strandat 25.080 kb on + strandat 25.097 kb on + strandat 25.097 kb on + strandat 25.105 kb on - strandat 25.105 kb on - strandat 25.105 kb on - strandat 25.107 kb on + strandat 25.161 kb on + strandat 25.199 kb on + strandat 25.200 kb on + strandat 25.210 kb on + strandat 25.225 kb on - strandat 25.302 kb on - strand, within HP15_22at 25.373 kb on + strand, within HP15_22at 25.400 kb on + strand, within HP15_22at 25.400 kb on + strand, within HP15_22at 25.412 kb on + strand, within HP15_22at 25.420 kb on - strand, within HP15_22at 25.441 kb on + strand, within HP15_22at 25.466 kb on - strand, within HP15_22at 25.578 kb on + strand, within HP15_22at 25.608 kb on - strand, within HP15_22at 25.642 kb on - strand, within HP15_22at 25.651 kb on + strand, within HP15_22at 25.664 kb on - strand, within HP15_22at 25.776 kb on - strandat 25.788 kb on + strandat 25.821 kb on - strandat 25.821 kb on - strandat 25.893 kb on + strandat 25.906 kb on + strandat 25.962 kb on + strandat 25.970 kb on - strandat 25.972 kb on - strandat 26.015 kb on - strandat 26.073 kb on + strandat 26.081 kb on - strandat 26.081 kb on - strandat 26.081 kb on - strandat 26.086 kb on - strandat 26.162 kb on + strand, within HP15_23at 26.170 kb on - strand, within HP15_23at 26.170 kb on - strand, within HP15_23at 26.198 kb on - strand, within HP15_23at 26.200 kb on + strand, within HP15_23at 26.200 kb on + strand, within HP15_23at 26.208 kb on - strand, within HP15_23at 26.265 kb on - strand, within HP15_23at 26.281 kb on + strand, within HP15_23at 26.334 kb on + strand, within HP15_23at 26.342 kb on - strand, within HP15_23at 26.365 kb on + strand, within HP15_23at 26.373 kb on - strand, within HP15_23at 26.436 kb on + strand, within HP15_23at 26.464 kb on - strand, within HP15_23at 26.464 kb on - strand, within HP15_23at 26.572 kb on + strand, within HP15_23at 26.574 kb on + strand, within HP15_23at 26.580 kb on - strand, within HP15_23at 26.585 kb on + strand, within HP15_23at 26.666 kb on + strand, within HP15_23at 26.734 kb on - strand, within HP15_23at 26.748 kb on - strand, within HP15_23

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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24,181 - HP15_21 0.34 +1.4
24,228 - HP15_21 0.37 -0.4
24,252 + HP15_21 0.39 -0.5
24,260 - HP15_21 0.40 -1.8
24,275 - HP15_21 0.41 +0.6
24,296 + HP15_21 0.42 +0.0
24,296 + HP15_21 0.42 -0.9
24,303 + HP15_21 0.43 +0.1
24,311 - HP15_21 0.43 -1.0
24,311 - HP15_21 0.43 -1.1
24,366 + HP15_21 0.47 +0.7
24,366 + HP15_21 0.47 -1.2
24,366 + HP15_21 0.47 +1.1
24,373 - HP15_21 0.48 -0.3
24,455 - HP15_21 0.54 -2.0
24,462 + HP15_21 0.54 +1.1
24,462 + HP15_21 0.54 -0.7
24,469 + HP15_21 0.55 -0.4
24,470 - HP15_21 0.55 -0.8
24,470 - HP15_21 0.55 +0.9
24,477 - HP15_21 0.55 +1.0
24,499 - HP15_21 0.57 -2.7
24,501 + HP15_21 0.57 -0.3
24,501 + HP15_21 0.57 -1.6
24,501 + HP15_21 0.57 -0.3
24,501 + HP15_21 0.57 +0.2
24,509 - HP15_21 0.57 +0.3
24,509 - HP15_21 0.57 -0.1
24,509 - HP15_21 0.57 +1.3
24,509 - HP15_21 0.57 -0.6
24,509 - HP15_21 0.57 +0.9
24,509 - HP15_21 0.57 -0.2
24,509 - HP15_21 0.57 -0.5
24,509 - HP15_21 0.57 -1.7
24,607 - HP15_21 0.64 +0.4
24,668 - HP15_21 0.69 +0.3
24,669 + HP15_21 0.69 -0.6
24,677 - HP15_21 0.69 -0.6
24,678 - HP15_21 0.70 +2.1
24,743 + HP15_21 0.74 +0.9
24,743 - HP15_21 0.74 +0.1
24,747 + HP15_21 0.74 +0.1
24,789 + HP15_21 0.77 +1.5
24,890 - HP15_21 0.85 +1.0
24,901 + HP15_21 0.86 -0.4
24,901 + HP15_21 0.86 +0.4
24,913 + HP15_21 0.86 +0.7
24,961 - HP15_21 0.90 +0.6
24,999 - +0.4
25,080 + +0.7
25,097 + +0.5
25,097 + +0.9
25,105 - +0.0
25,105 - -0.9
25,105 - +0.2
25,107 + +0.6
25,161 + +1.1
25,199 + -1.0
25,200 + -0.2
25,210 + -0.3
25,225 - -1.2
25,302 - HP15_22 0.21 +0.8
25,373 + HP15_22 0.34 -1.8
25,400 + HP15_22 0.38 +0.4
25,400 + HP15_22 0.38 -0.0
25,412 + HP15_22 0.40 -1.5
25,420 - HP15_22 0.42 +1.0
25,441 + HP15_22 0.45 +0.8
25,466 - HP15_22 0.50 -1.5
25,578 + HP15_22 0.69 +0.1
25,608 - HP15_22 0.74 +0.0
25,642 - HP15_22 0.80 +0.2
25,651 + HP15_22 0.82 -0.5
25,664 - HP15_22 0.84 +0.5
25,776 - -0.5
25,788 + -1.6
25,821 - +0.8
25,821 - +0.9
25,893 + -0.3
25,906 + -1.5
25,962 + -1.3
25,970 - -0.4
25,972 - +0.7
26,015 - -0.0
26,073 + -0.1
26,081 - -0.5
26,081 - -1.1
26,081 - +1.1
26,086 - -0.8
26,162 + HP15_23 0.16 -0.0
26,170 - HP15_23 0.17 -0.8
26,170 - HP15_23 0.17 -1.3
26,198 - HP15_23 0.19 +0.3
26,200 + HP15_23 0.19 -0.3
26,200 + HP15_23 0.19 +0.5
26,208 - HP15_23 0.20 +0.8
26,265 - HP15_23 0.26 +1.2
26,281 + HP15_23 0.27 -0.3
26,334 + HP15_23 0.32 -0.1
26,342 - HP15_23 0.33 -0.8
26,365 + HP15_23 0.35 -1.5
26,373 - HP15_23 0.36 -0.5
26,436 + HP15_23 0.42 +1.4
26,464 - HP15_23 0.45 -0.0
26,464 - HP15_23 0.45 -0.2
26,572 + HP15_23 0.55 +1.1
26,574 + HP15_23 0.56 +1.3
26,580 - HP15_23 0.56 +0.9
26,585 + HP15_23 0.57 +0.3
26,666 + HP15_23 0.64 +0.6
26,734 - HP15_23 0.71 +0.2
26,748 - HP15_23 0.72 +0.6

Or see this region's nucleotide sequence