Strain Fitness in Marinobacter adhaerens HP15 around HP15_1649

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1646 and HP15_1647 are separated by 12 nucleotidesHP15_1647 and HP15_1648 are separated by 51 nucleotidesHP15_1648 and HP15_1649 are separated by 84 nucleotidesHP15_1649 and HP15_1650 are separated by 115 nucleotidesHP15_1650 and HP15_1651 are separated by 17 nucleotides HP15_1646: HP15_1646 - conserved hypothetical protein, at 1,743,878 to 1,744,627 _1646 HP15_1647: HP15_1647 - DoxX, at 1,744,640 to 1,745,095 _1647 HP15_1648: HP15_1648 - protein containing thioredoxin domain, at 1,745,147 to 1,745,542 _1648 HP15_1649: HP15_1649 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,745,627 to 1,747,027 _1649 HP15_1650: HP15_1650 - iron-sulfur cluster-binding protein-like protein, at 1,747,143 to 1,747,439 _1650 HP15_1651: HP15_1651 - iron-sulfur cluster-binding protein, at 1,747,457 to 1,748,536 _1651 Position (kb) 1745 1746 1747 1748Strain fitness (log2 ratio) -1 0 1 2at 1744.829 kb on - strand, within HP15_1647at 1745.040 kb on + strand, within HP15_1647at 1745.040 kb on + strand, within HP15_1647at 1745.090 kb on + strandat 1745.090 kb on + strandat 1745.104 kb on + strandat 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.297 kb on + strand, within HP15_1648at 1745.300 kb on - strand, within HP15_1648at 1745.300 kb on - strand, within HP15_1648at 1745.362 kb on + strand, within HP15_1648at 1745.367 kb on + strand, within HP15_1648at 1745.419 kb on - strand, within HP15_1648at 1745.489 kb on + strand, within HP15_1648at 1745.626 kb on - strandat 1745.626 kb on - strandat 1745.742 kb on + strandat 1745.888 kb on - strand, within HP15_1649at 1745.890 kb on + strand, within HP15_1649at 1746.001 kb on + strand, within HP15_1649at 1746.351 kb on - strand, within HP15_1649at 1746.358 kb on + strand, within HP15_1649at 1746.483 kb on - strand, within HP15_1649at 1746.495 kb on + strand, within HP15_1649at 1746.515 kb on - strand, within HP15_1649at 1746.539 kb on - strand, within HP15_1649at 1746.540 kb on + strand, within HP15_1649at 1746.548 kb on - strand, within HP15_1649at 1746.569 kb on + strand, within HP15_1649at 1746.834 kb on + strand, within HP15_1649at 1746.841 kb on + strand, within HP15_1649at 1746.861 kb on + strand, within HP15_1649at 1746.956 kb on - strandat 1747.134 kb on - strandat 1747.190 kb on - strand, within HP15_1650at 1747.333 kb on - strand, within HP15_1650at 1747.450 kb on - strandat 1747.450 kb on - strandat 1747.500 kb on - strandat 1747.546 kb on + strandat 1747.554 kb on - strandat 1747.573 kb on - strand, within HP15_1651at 1747.608 kb on + strand, within HP15_1651at 1747.638 kb on - strand, within HP15_1651at 1747.664 kb on - strand, within HP15_1651at 1747.695 kb on - strand, within HP15_1651at 1747.899 kb on + strand, within HP15_1651at 1747.993 kb on + strand, within HP15_1651at 1748.015 kb on - strand, within HP15_1651

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,744,829 - HP15_1647 0.41 -0.2
1,745,040 + HP15_1647 0.88 -0.8
1,745,040 + HP15_1647 0.88 -0.3
1,745,090 + +1.5
1,745,090 + +0.6
1,745,104 + -0.3
1,745,292 + HP15_1648 0.37 +1.0
1,745,292 + HP15_1648 0.37 -0.8
1,745,292 + HP15_1648 0.37 -1.2
1,745,292 + HP15_1648 0.37 +0.2
1,745,292 + HP15_1648 0.37 +0.9
1,745,297 + HP15_1648 0.38 +0.5
1,745,300 - HP15_1648 0.39 -1.2
1,745,300 - HP15_1648 0.39 +0.2
1,745,362 + HP15_1648 0.54 -0.1
1,745,367 + HP15_1648 0.56 +0.9
1,745,419 - HP15_1648 0.69 -0.7
1,745,489 + HP15_1648 0.86 +1.3
1,745,626 - -1.4
1,745,626 - +0.3
1,745,742 + +1.9
1,745,888 - HP15_1649 0.19 +0.6
1,745,890 + HP15_1649 0.19 +1.4
1,746,001 + HP15_1649 0.27 +0.5
1,746,351 - HP15_1649 0.52 +0.0
1,746,358 + HP15_1649 0.52 -0.3
1,746,483 - HP15_1649 0.61 -0.2
1,746,495 + HP15_1649 0.62 +1.5
1,746,515 - HP15_1649 0.63 -1.0
1,746,539 - HP15_1649 0.65 +2.4
1,746,540 + HP15_1649 0.65 +0.2
1,746,548 - HP15_1649 0.66 -0.3
1,746,569 + HP15_1649 0.67 -1.2
1,746,834 + HP15_1649 0.86 -0.2
1,746,841 + HP15_1649 0.87 +1.1
1,746,861 + HP15_1649 0.88 +0.8
1,746,956 - +1.2
1,747,134 - +0.5
1,747,190 - HP15_1650 0.16 +1.2
1,747,333 - HP15_1650 0.64 +1.0
1,747,450 - +1.6
1,747,450 - -0.5
1,747,500 - -1.4
1,747,546 + -0.7
1,747,554 - +0.5
1,747,573 - HP15_1651 0.11 +2.2
1,747,608 + HP15_1651 0.14 +1.9
1,747,638 - HP15_1651 0.17 +0.4
1,747,664 - HP15_1651 0.19 -0.2
1,747,695 - HP15_1651 0.22 +0.2
1,747,899 + HP15_1651 0.41 -0.9
1,747,993 + HP15_1651 0.50 -0.5
1,748,015 - HP15_1651 0.52 +0.5

Or see this region's nucleotide sequence