Strain Fitness in Marinobacter adhaerens HP15 around HP15_1621

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1620 and HP15_1621 are separated by 15 nucleotidesHP15_1621 and HP15_1622 are separated by 100 nucleotides HP15_1620: HP15_1620 - flavin-containing monooxygenase FMO, at 1,716,453 to 1,718,018 _1620 HP15_1621: HP15_1621 - transcriptional regulator, LysR family protein, at 1,718,034 to 1,718,945 _1621 HP15_1622: HP15_1622 - NADH dehydrogenase subunit L, at 1,719,046 to 1,720,665 _1622 Position (kb) 1718 1719Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1717.305 kb on + strand, within HP15_1620at 1717.305 kb on + strand, within HP15_1620at 1717.311 kb on + strand, within HP15_1620at 1717.414 kb on - strand, within HP15_1620at 1717.486 kb on + strand, within HP15_1620at 1717.494 kb on - strand, within HP15_1620at 1717.494 kb on - strand, within HP15_1620at 1717.528 kb on - strand, within HP15_1620at 1717.678 kb on - strand, within HP15_1620at 1717.780 kb on + strand, within HP15_1620at 1717.878 kb on - strandat 1717.936 kb on - strandat 1718.137 kb on + strand, within HP15_1621at 1718.145 kb on - strand, within HP15_1621at 1718.145 kb on - strand, within HP15_1621at 1718.155 kb on - strand, within HP15_1621at 1718.177 kb on + strand, within HP15_1621at 1718.316 kb on - strand, within HP15_1621at 1718.419 kb on - strand, within HP15_1621at 1718.511 kb on + strand, within HP15_1621at 1718.511 kb on + strand, within HP15_1621at 1718.530 kb on + strand, within HP15_1621at 1718.579 kb on + strand, within HP15_1621at 1718.663 kb on - strand, within HP15_1621at 1718.779 kb on - strand, within HP15_1621at 1719.158 kb on + strandat 1719.195 kb on + strandat 1719.279 kb on - strand, within HP15_1622at 1719.308 kb on - strand, within HP15_1622at 1719.364 kb on - strand, within HP15_1622at 1719.422 kb on + strand, within HP15_1622at 1719.500 kb on + strand, within HP15_1622at 1719.506 kb on + strand, within HP15_1622at 1719.530 kb on + strand, within HP15_1622at 1719.611 kb on + strand, within HP15_1622at 1719.611 kb on + strand, within HP15_1622at 1719.655 kb on - strand, within HP15_1622at 1719.657 kb on + strand, within HP15_1622at 1719.672 kb on + strand, within HP15_1622at 1719.771 kb on + strand, within HP15_1622at 1719.817 kb on - strand, within HP15_1622at 1719.817 kb on - strand, within HP15_1622at 1719.827 kb on - strand, within HP15_1622

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,717,305 + HP15_1620 0.54 -0.5
1,717,305 + HP15_1620 0.54 +0.8
1,717,311 + HP15_1620 0.55 +0.2
1,717,414 - HP15_1620 0.61 -1.3
1,717,486 + HP15_1620 0.66 -0.4
1,717,494 - HP15_1620 0.66 +0.2
1,717,494 - HP15_1620 0.66 -2.1
1,717,528 - HP15_1620 0.69 +1.1
1,717,678 - HP15_1620 0.78 -0.8
1,717,780 + HP15_1620 0.85 +0.7
1,717,878 - +0.3
1,717,936 - +0.4
1,718,137 + HP15_1621 0.11 -1.2
1,718,145 - HP15_1621 0.12 -0.7
1,718,145 - HP15_1621 0.12 -0.1
1,718,155 - HP15_1621 0.13 -0.8
1,718,177 + HP15_1621 0.16 -3.7
1,718,316 - HP15_1621 0.31 -0.1
1,718,419 - HP15_1621 0.42 -0.3
1,718,511 + HP15_1621 0.52 -0.2
1,718,511 + HP15_1621 0.52 +0.4
1,718,530 + HP15_1621 0.54 -1.5
1,718,579 + HP15_1621 0.60 -0.7
1,718,663 - HP15_1621 0.69 -0.0
1,718,779 - HP15_1621 0.82 -1.1
1,719,158 + -1.6
1,719,195 + -1.4
1,719,279 - HP15_1622 0.14 +0.1
1,719,308 - HP15_1622 0.16 +3.5
1,719,364 - HP15_1622 0.20 +0.4
1,719,422 + HP15_1622 0.23 +1.4
1,719,500 + HP15_1622 0.28 +0.9
1,719,506 + HP15_1622 0.28 -0.1
1,719,530 + HP15_1622 0.30 +0.7
1,719,611 + HP15_1622 0.35 -1.0
1,719,611 + HP15_1622 0.35 -1.2
1,719,655 - HP15_1622 0.38 -0.4
1,719,657 + HP15_1622 0.38 +0.0
1,719,672 + HP15_1622 0.39 -0.1
1,719,771 + HP15_1622 0.45 +0.5
1,719,817 - HP15_1622 0.48 -0.1
1,719,817 - HP15_1622 0.48 +0.3
1,719,827 - HP15_1622 0.48 -0.7

Or see this region's nucleotide sequence