Strain Fitness in Marinobacter adhaerens HP15 around HP15_1432

Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1430 and HP15_1431 are separated by 624 nucleotidesHP15_1431 and HP15_1432 are separated by 65 nucleotidesHP15_1432 and HP15_1433 are separated by 71 nucleotidesHP15_1433 and HP15_1434 are separated by 1 nucleotides HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050 _1430 HP15_1431: HP15_1431 - zinc finger, C4 DksA/TraR-type, at 1,511,675 to 1,511,974 _1431 HP15_1432: HP15_1432 - conserved hypothetical protein, membrane, at 1,512,040 to 1,512,318 _1432 HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887 _1433 HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209 _1434 Position (kb) 1512 1513Strain fitness (log2 ratio) -3 -2 -1 0 1at 1511.054 kb on + strandat 1511.145 kb on + strandat 1511.153 kb on - strandat 1511.257 kb on - strandat 1511.480 kb on - strandat 1511.669 kb on - strandat 1511.937 kb on + strand, within HP15_1431at 1511.947 kb on + strandat 1511.971 kb on - strandat 1512.020 kb on + strandat 1512.046 kb on - strandat 1512.106 kb on + strand, within HP15_1432at 1512.114 kb on - strand, within HP15_1432at 1512.114 kb on - strand, within HP15_1432at 1512.348 kb on - strandat 1512.513 kb on - strand, within HP15_1433at 1512.577 kb on + strand, within HP15_1433at 1512.577 kb on + strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.585 kb on - strand, within HP15_1433at 1512.662 kb on - strand, within HP15_1433at 1512.852 kb on + strandat 1512.968 kb on - strand, within HP15_1434at 1513.017 kb on - strand, within HP15_1434at 1513.024 kb on - strand, within HP15_1434at 1513.073 kb on + strand, within HP15_1434at 1513.095 kb on + strand, within HP15_1434at 1513.121 kb on - strand, within HP15_1434at 1513.141 kb on - strand, within HP15_1434

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
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1,511,054 + -1.5
1,511,145 + +1.5
1,511,153 - +0.9
1,511,257 - +0.1
1,511,480 - -0.5
1,511,669 - +0.0
1,511,937 + HP15_1431 0.87 -0.5
1,511,947 + -0.1
1,511,971 - +1.2
1,512,020 + +0.7
1,512,046 - -1.7
1,512,106 + HP15_1432 0.24 -1.7
1,512,114 - HP15_1432 0.27 +0.5
1,512,114 - HP15_1432 0.27 -3.1
1,512,348 - +0.5
1,512,513 - HP15_1433 0.25 +0.6
1,512,577 + HP15_1433 0.38 -0.2
1,512,577 + HP15_1433 0.38 -0.5
1,512,585 - HP15_1433 0.39 +1.1
1,512,585 - HP15_1433 0.39 -0.7
1,512,585 - HP15_1433 0.39 +0.7
1,512,662 - HP15_1433 0.55 -0.5
1,512,852 + -0.1
1,512,968 - HP15_1434 0.25 -0.5
1,513,017 - HP15_1434 0.40 -0.2
1,513,024 - HP15_1434 0.42 +0.8
1,513,073 + HP15_1434 0.57 -0.0
1,513,095 + HP15_1434 0.64 +0.0
1,513,121 - HP15_1434 0.72 +1.5
1,513,141 - HP15_1434 0.79 -0.5

Or see this region's nucleotide sequence