Experiment: Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_979 and HP15_980 are separated by 256 nucleotides HP15_980 and HP15_981 overlap by 73 nucleotides HP15_981 and HP15_982 are separated by 140 nucleotides
HP15_979: HP15_979 - MOSC domain containing protein, at 988,583 to 989,380
_979
HP15_980: HP15_980 - hypothetical protein, at 989,637 to 990,023
_980
HP15_981: HP15_981 - conserved hypothetical protein, at 989,951 to 990,163
_981
HP15_982: HP15_982 - conserved hypothetical protein, membrane, at 990,304 to 993,279
_982
Position (kb) 989
990
991 Strain fitness (log2 ratio) -2
-1
0
1 at 989.000 kb on - strand, within HP15_979 at 989.021 kb on + strand, within HP15_979 at 989.260 kb on + strand, within HP15_979 at 989.303 kb on + strand at 989.389 kb on - strand at 989.399 kb on - strand at 989.415 kb on + strand at 989.553 kb on - strand at 989.580 kb on - strand at 989.649 kb on - strand at 989.663 kb on + strand at 989.830 kb on - strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.852 kb on + strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.860 kb on - strand, within HP15_980 at 989.929 kb on + strand, within HP15_980 at 989.959 kb on + strand at 990.009 kb on - strand at 990.018 kb on + strand at 990.097 kb on + strand, within HP15_981 at 990.097 kb on + strand, within HP15_981 at 990.105 kb on - strand, within HP15_981 at 990.211 kb on + strand at 990.229 kb on - strand at 990.229 kb on - strand at 990.399 kb on - strand at 990.458 kb on - strand at 990.474 kb on - strand at 990.474 kb on - strand at 990.474 kb on - strand at 990.488 kb on - strand at 990.501 kb on - strand at 990.626 kb on - strand, within HP15_982 at 990.726 kb on + strand, within HP15_982 at 990.726 kb on + strand, within HP15_982 at 990.734 kb on - strand, within HP15_982 at 990.815 kb on + strand, within HP15_982 at 990.829 kb on + strand, within HP15_982 at 990.829 kb on + strand, within HP15_982 at 990.864 kb on + strand, within HP15_982 at 990.864 kb on + strand, within HP15_982 at 991.047 kb on - strand, within HP15_982 at 991.054 kb on - strand, within HP15_982 at 991.054 kb on - strand, within HP15_982 at 991.111 kb on - strand, within HP15_982 at 991.119 kb on + strand, within HP15_982 at 991.140 kb on - strand, within HP15_982 at 991.140 kb on - strand, within HP15_982 at 991.154 kb on - strand, within HP15_982
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Prochlorococcus marinus str. MED4 10:1 starting OD to HP15 remove 989,000 - HP15_979 0.52 +0.5 989,021 + HP15_979 0.55 +1.3 989,260 + HP15_979 0.85 -0.4 989,303 + -1.0 989,389 - +1.1 989,399 - -0.7 989,415 + +1.3 989,553 - +0.1 989,580 - +0.7 989,649 - -0.5 989,663 + -1.3 989,830 - HP15_980 0.50 -0.6 989,852 + HP15_980 0.56 -0.5 989,852 + HP15_980 0.56 +1.2 989,860 - HP15_980 0.58 -0.5 989,860 - HP15_980 0.58 +0.4 989,929 + HP15_980 0.75 -0.5 989,959 + -1.6 990,009 - -0.9 990,018 + -1.7 990,097 + HP15_981 0.69 -0.6 990,097 + HP15_981 0.69 -1.6 990,105 - HP15_981 0.72 -0.4 990,211 + -0.7 990,229 - +0.1 990,229 - -1.7 990,399 - -1.7 990,458 - -0.1 990,474 - -0.9 990,474 - -0.2 990,474 - -1.8 990,488 - +0.1 990,501 - +0.6 990,626 - HP15_982 0.11 +0.6 990,726 + HP15_982 0.14 +0.1 990,726 + HP15_982 0.14 -0.2 990,734 - HP15_982 0.14 -0.7 990,815 + HP15_982 0.17 -0.3 990,829 + HP15_982 0.18 +0.1 990,829 + HP15_982 0.18 -0.3 990,864 + HP15_982 0.19 -0.9 990,864 + HP15_982 0.19 -1.6 991,047 - HP15_982 0.25 -1.3 991,054 - HP15_982 0.25 -0.3 991,054 - HP15_982 0.25 -0.7 991,111 - HP15_982 0.27 +0.2 991,119 + HP15_982 0.27 +0.3 991,140 - HP15_982 0.28 -0.4 991,140 - HP15_982 0.28 -0.2 991,154 - HP15_982 0.29 -0.0
Or see this region's nucleotide sequence